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5330439A09Rik Gene Detail
Summary
  • Symbol
    5330439A09Rik
  • Name
    RIKEN cDNA 5330439A09 gene
Location &
Maps
more
  • Sequence Map
    Chr8:55021585-55036592 bp, - strand
    From NCBI annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 8, 29.27 cM
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    699 from dbSNP Build 142
  • Strain Annotations
    19
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1924353
 lncRNA gene Chr8:55021585-55054022 (-)
129S1/SvImJ ENSMUSG00200006876
 lncRNA gene Chr8:50129799-50162245 (-)
A/J ENSMUSG00195004257
 lncRNA gene Chr8:50631470-50663902 (-)
AKR/J ENSMUSG00220004607
 lncRNA gene Chr8:50435552-50467999 (-)
BALB/cJ ENSMUSG00180002981
 lncRNA gene Chr8:50188784-50221229 (-)
C3H/HeJ ENSMUSG00175005343
 lncRNA gene Chr8:50332401-50364842 (-)
C57BL/6NJ ENSMUSG00215011128
 lncRNA gene Chr8:50113472-50145915 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0004124
 antisense lncRNA gene Chr8:47783264-47814517 (-)
CAST/EiJ ENSTCUG00005020571
 lncRNA gene Chr8:50050733-50083405 (-)
CBA/J ENSMUSG00210019254
 lncRNA gene Chr8:50202337-50234779 (-)
DBA/2J ENSMUSG00185008748
 lncRNA gene Chr8:56067541-56099986 (-)
FVB/NJ ENSMUSG00205002922
 lncRNA gene Chr8:49366253-49398664 (-)
JF1/MsJ ENSUMUG00000005855
 lncRNA gene Chr8:57700085-57732304 (-)
LP/J ENSMUSG00230017642
 lncRNA gene Chr8:59728929-59761371 (-)
NOD/ShiLtJ ENSMUSG00190006692
 lncRNA gene Chr8:50224508-50256949 (-)
NZO/HlLtJ ENSMUSG00225030840
 lncRNA gene Chr8:63312371-63344809 (-)
PWK/PhJ ENSLUMG00010009711
 lncRNA gene Chr8:49955198-49987381 (-)
SPRET/EiJ ENSMSPG00010015492
 lncRNA gene Chr8:50943082-50975186 (-)
WSB/EiJ ENSIUOG00005002628
 lncRNA gene Chr8:51034677-51070398 (-)



Homology
less
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    2 phenotype references
Gene Ontology
(GO)
Classifications
less
Molecular Function

No experimental evidence to support Molecular Function annotation, following literature review. See J:73796.
Biological Process

No experimental evidence to support Biological Process annotation, following literature review. See J:73796.
Cellular Component

No experimental evidence to support Cellular Component annotation, following literature review. See J:73796.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    597
  • cDNA Data
    1
Sequences &
Gene Models
less
  • All Sequences
    24
  • RefSeq
    1
Representative SequencesLengthStrain/SpeciesFlank
genomic 77103 NCBI Gene Model | MGI Sequence Detail 15008 C57BL/6J ±  kb
transcript AK019937 GenBank | ENA | DDBJ | MGI Sequence Detail 1121 C57BL/6J  
For the selected sequence
Molecular
Reagents
less
  • All nucleic 1
    cDNA 1

    Microarray probesets 1
References
more
  • Summaries
    All 11
    Phenotypes 2
  • Earliest
    J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
  • Latest
    J:80000 The FANTOM Consortium and The RIKEN Genome Exploration Research Group Phase I & II Team, Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Nature. 2002;420:563-573
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
09/08/2026
MGI 6.24 		The Jackson Laboratory