5330425B07Rik Gene Detail

Summary

• Symbol
  5330425B07Rik
• Name
  RIKEN cDNA 5330425B07 gene

• Feature Type
  lncRNA gene
• IDs
  MGI:1924313
  NCBI Gene: 102633677
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr3:115941759-115942785 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 3, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  143 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1924313	lncRNA gene	Chr3:115928589-115942785 (+)
129S1/SvImJ	ENSMUSG00200026502	unclassified gene	Chr3:112599218-112600248 (+)
A/J	ENSMUSG00195016966	unclassified gene	Chr3:112843910-112844935 (+)
AKR/J	ENSMUSG00220027009	unclassified gene	Chr3:111251221-111252250 (+)
BALB/cJ	ENSMUSG00180030875	unclassified gene	Chr3:112788637-112789663 (+)
C3H/HeJ	ENSMUSG00175028793	unclassified gene	Chr3:112329162-112330188 (+)
C57BL/6NJ	ENSMUSG00215007093	unclassified gene	Chr3:113066971-113067998 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0001031	unclassified gene	Chr3:109855894-109856926 (+)
CAST/EiJ	ENSTCUG00005033764	unclassified gene	Chr3:113325422-113326454 (+)
CBA/J	ENSMUSG00210002958	unclassified gene	Chr3:112937926-112938952 (+)
DBA/2J	ENSMUSG00185007623	unclassified gene	Chr3:113527957-113528982 (+)
FVB/NJ	ENSMUSG00205031183	unclassified gene	Chr3:111876880-111877906 (+)
JF1/MsJ	ENSUMUG00000003045	unclassified gene	Chr3:112421878-112422902 (+)
LP/J	ENSMUSG00230012331	unclassified gene	Chr3:115460094-115461122 (+)
NOD/ShiLtJ	ENSMUSG00190036967	unclassified gene	Chr3:113879782-113880808 (+)
NZO/HlLtJ	ENSMUSG00225003911	unclassified gene	Chr3:117950301-117951326 (+)
PWK/PhJ	ENSLUMG00010024544	unclassified gene	Chr3:112309138-112310161 (+)
SPRET/EiJ	ENSMSPG00010030035	unclassified gene	Chr3:112937738-112938772 (+)
WSB/EiJ	ENSIUOG00005007452	unclassified gene	Chr3:113085914-113086941 (+)

Homology

• Gene Tree
  5330425B07Rik
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  1
• Chemically induced (other)
  1
• Genomic Mutations
  1 involving 5330425B07Rik
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597
• cDNA Data
  1

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  29
• RefSeq
  7

• Ensembl
  ENSMUSG00000105729 (Evidence)
• NCBI Gene
  102633677

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000105729	Ensembl Gene Model | MGI Sequence Detail	1027	C57BL/6J
transcript	AK019908	GenBank | ENA | DDBJ | MGI Sequence Detail	1029	C57BL/6J

Molecular
Reagents

• All nucleic 1

  cDNA 1

  
  

  Microarray probesets 2

References

• Summaries
  All 10

  Phenotypes 2
• Earliest
  J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
• Latest
  J:80000 The FANTOM Consortium and The RIKEN Genome Exploration Research Group Phase I & II Team, Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Nature. 2002;420:563-573