4931408D14Rik Gene Detail

Summary

• Symbol
  4931408D14Rik
• Name
  RIKEN cDNA 4931408D14 gene
• Synonyms
  lncRAP2

• Feature Type
  lncRNA gene
• IDs
  MGI:1924309
  NCBI Gene: 77059
• Alliance
  genome feature page
• Transcription Start Sites
  3 TSS

Location &
Maps

• Sequence Map
  Chr19:37235822-37241494 bp, - strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 19, 32.23 cM, cytoband C3
• Mapping Data
  2 experiments

Strain
Comparison

• SNPs within 2kb
  195 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1924309	lncRNA gene	Chr19:37232068-37241537 (-)
129S1/SvImJ	ENSMUSG00200031906	lncRNA gene	Chr19:34026563-34032337 (-)
A/J	ENSMUSG00195011941	lncRNA gene	Chr19:34125209-34130986 (-)
AKR/J	ENSMUSG00220019148	lncRNA gene	Chr19:34009051-34014826 (-)
BALB/cJ	ENSMUSG00180034298	lncRNA gene	Chr19:34453990-34459769 (-)
C3H/HeJ	ENSMUSG00175044301	lncRNA gene	Chr19:33888118-33893902 (-)
C57BL/6NJ	ENSMUSG00215033192	lncRNA gene	Chr19:33900248-33906024 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005015899	lncRNA gene	Chr19:33567280-33573053 (-)
CBA/J	ENSMUSG00210035830	lncRNA gene	Chr19:33967404-33973188 (-)
DBA/2J	ENSMUSG00185034004	lncRNA gene	Chr19:34487612-34493394 (-)
FVB/NJ	ENSMUSG00205008458	lncRNA gene	Chr19:33732787-33738561 (-)
JF1/MsJ	ENSUMUG00000050792	lncRNA gene	Chr19:34637625-34643412 (-)
LP/J	ENSMUSG00230036863	lncRNA gene	Chr19:35298431-35304207 (-)
NOD/ShiLtJ	ENSMUSG00190011883	lncRNA gene	Chr19:33864468-33870244 (-)
NZO/HlLtJ	ENSMUSG00225029710	lncRNA gene	Chr19:38848271-38854047 (-)
PWK/PhJ	ENSLUMG00010001470	lncRNA gene	Chr19:34020634-34026418 (-)
SPRET/EiJ	ENSMSPG00010023331	lncRNA gene	Chr19:33734674-33740271 (-)
WSB/EiJ	ENSIUOG00005040900	lncRNA gene	Chr19:33375467-33381251 (-)

Homology

• Gene Tree
  4931408D14Rik
  

Expression

• cDNA Data
  8

• Other Mouse Links
  GEO

Sequences &
Gene Models

• All Sequences
  40
• RefSeq
  2

• Ensembl
  ENSMUSG00000120174 (Evidence)
• NCBI Gene
  77059

Representative Sequences			Length	Strain/Species
genomic	77059	NCBI Gene Model | MGI Sequence Detail	5673	C57BL/6J
transcript	NR_040298	RefSeq | MGI Sequence Detail	3243	C57BL/6

Molecular
Reagents

• All nucleic 8

  cDNA 8

  
  

  Microarray probesets 1

References

• Summaries
  All 11
• Earliest
  J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
• Latest
  J:340235 Alvarez-Dominguez JR, et al., An adipose lncRAP2-Igf2bp2 complex enhances adipogenesis and energy expenditure by stabilizing target mRNAs. iScience. 2022 Jan 21;25(1):103680

TSS for 4931408D14Rik:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr159079	Chr19:37241459-37241512 (-)	8 bp
Tssr159078	Chr19:37241320-37241327 (-)	170 bp
Tssr159077	Chr19:37241259-37241270 (-)	229 bp