4921528I07Rik Gene Detail

Summary

• Symbol
  4921528I07Rik
• Name
  RIKEN cDNA 4921528I07 gene

• Feature Type
  protein coding gene
  BioType Conflict
  
• IDs
  MGI:1924299
  NCBI Gene: 77049
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr9:114066763-114146103 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 9, 64.34 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  1313 from dbSNP Build 142
• Strain Annotations
  22

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1924299	protein coding gene	Chr9:114066763-114146132 (-)
129S1/SvImJ	no annotation
A/J	ENSMUSG00195045698	lncRNA gene	Chr9:110372952-110449331 (-)
AKR/J	ENSMUSG00220032362	lncRNA gene	Chr9:110822884-110905043 (-)
AKR/J	ENSMUSG00220022899	protein coding gene	Chr9:110817029-110905052 (-)
BALB/cJ	ENSMUSG00180038217	lncRNA gene	Chr9:110781809-110858107 (+)
BALB/cJ	ENSMUSG00180035723	lncRNA gene	Chr9:110911861-110987034 (-)
C3H/HeJ	ENSMUSG00175048628	lncRNA gene	Chr9:111002878-111079193 (+)
C3H/HeJ	ENSMUSG00175047084	lncRNA gene	Chr9:111132942-111208097 (-)
C57BL/6NJ	ENSMUSG00215039567	protein coding gene	Chr9:111011634-111091061 (-)
C57BL/6NJ	ENSMUSG00215041896	lncRNA gene	Chr9:111011722-111091052 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005037232	lncRNA gene	Chr9:110800743-110867736 (-)
CBA/J	ENSMUSG00210045816	lncRNA gene	Chr9:110848321-110927707 (-)
CBA/J	ENSMUSG00210030275	protein coding gene	Chr9:110848319-110927716 (-)
DBA/2J	ENSMUSG00185044337	lncRNA gene	Chr9:111185078-111264463 (-)
DBA/2J	ENSMUSG00185032305	protein coding gene	Chr9:111185076-111264472 (-)
FVB/NJ	no annotation
JF1/MsJ	no annotation
LP/J	ENSMUSG00230050566	lncRNA gene	Chr9:111292236-111371618 (-)
LP/J	ENSMUSG00230048502	protein coding gene	Chr9:111292234-111371627 (-)
NOD/ShiLtJ	ENSMUSG00190050825	lncRNA gene	Chr9:110778192-110857576 (-)
NOD/ShiLtJ	ENSMUSG00190047599	protein coding gene	Chr9:110778190-110857585 (-)
NZO/HlLtJ	ENSMUSG00225024705	lncRNA gene	Chr9:111573776-111653156 (-)
NZO/HlLtJ	ENSMUSG00225023805	protein coding gene	Chr9:111573774-111653165 (-)
PWK/PhJ	no annotation
SPRET/EiJ	no annotation
WSB/EiJ	ENSIUOG00005048009	lncRNA gene	Chr9:110240819-110323201 (-)

Homology

• Gene Tree
  4921528I07Rik
  

Mutations,
Alleles, and
Phenotypes

• Incidental Mutations
  Mutagenetix , APF
• Find Mice (IMSR)
  6 strains or lines available

Expression

• Assay Results
  597
• cDNA Data
  2

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  44
• RefSeq
  4
• UniProt
  1

• Ensembl
  ENSMUSG00000064299 (Evidence)
• NCBI Gene
  77049

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000064299	Ensembl Gene Model | MGI Sequence Detail	79341	C57BL/6J
transcript	ENSMUST00000213446	Ensembl | MGI Sequence Detail	3805	Not Applicable
polypeptide	NP_001371174	RefSeq | MGI Sequence Detail	540	C57BL/6

Protein
Information

• UniProt
  1 Sequence

Molecular
Reagents

• All nucleic 2

  cDNA 2

  
  

  Microarray probesets 3

References

• Summaries
  All 11
• Earliest
  J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
• Latest
  J:80000 The FANTOM Consortium and The RIKEN Genome Exploration Research Group Phase I & II Team, Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Nature. 2002;420:563-573