2700099C18Rik Pseudogene Detail

Summary

• Symbol
  2700099C18Rik
• Name
  RIKEN cDNA 2700099C18 gene
• Synonyms
  9430041D22Rik

• Feature Type
  pseudogene
• IDs
  MGI:1924272
  NCBI Gene: 77022
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr17:95059923-95082454 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 17, 61.19 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  384 from dbSNP Build 142
• Strain Annotations
  12

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1924272	pseudogene	Chr17:95057528-95082557 (+)
129S1/SvImJ	ENSMUSG00200022789	pseudogene	Chr17:90476083-90501188 (+)
A/J	no annotation
AKR/J	no annotation
BALB/cJ	ENSMUSG00180000348	pseudogene	Chr17:91568979-91594091 (+)
C3H/HeJ	ENSMUSG00175008090	pseudogene	Chr17:90792679-90817779 (+)
C57BL/6NJ	no annotation
CAROLI/EiJ	MGP_CAROLIEiJ_G0036956	pseudogene	Chr17:67470247-67503979 (-)
CAST/EiJ	ENSTCUG00005007030	pseudogene	Chr17:91394092-91403084 (+)
CBA/J	no annotation
DBA/2J	ENSMUSG00185010821	pseudogene	Chr17:93426572-93451677 (+)
FVB/NJ	no annotation
JF1/MsJ	ENSUMUG00000005831	pseudogene	Chr17:93304874-93314085 (+)
LP/J	ENSMUSG00230011072	pseudogene	Chr17:94469135-94494235 (+)
NOD/ShiLtJ	ENSMUSG00190009808	pseudogene	Chr17:90577751-90602868 (+)
NZO/HlLtJ	ENSMUSG00225029480	pseudogene	Chr17:96761891-96786993 (+)
PWK/PhJ	ENSLUMG00010032650	pseudogene	Chr17:90503434-90512468 (+)
SPRET/EiJ	no annotation
WSB/EiJ	no annotation

Homology

• Gene Tree
  2700099C18Rik
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  2
• Gene trapped
  2
• Incidental Mutations
  APF
• Find Mice (IMSR)
  2 strains or lines available

Expression

• Assay Results
  597
• cDNA Data
  8
• Literature Summary
  1

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  26
• RefSeq
  1

• Ensembl
  ENSMUSG00000098090 (Evidence)
• NCBI Gene
  77022

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000098090	Ensembl Gene Model | MGI Sequence Detail	22532	C57BL/6J
transcript	ENSMUST00000183133	Ensembl | MGI Sequence Detail	1344	Not Applicable

Molecular
Reagents

• All nucleic 9

  cDNA 9

  
  

  Microarray probesets 3

Other
Accession IDs

MGI:1924576

References

• Summaries
  All 15

  Developmental Gene Expression 1

  Phenotypes 2
• Earliest
  J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
• Latest
  J:152865 Georgas K, et al., Analysis of early nephron patterning reveals a role for distal RV proliferation in fusion to the ureteric tip via a cap mesenchyme-derived connecting segment. Dev Biol. 2009 Aug 15;332(2):273-86

TSS for 2700099C18Rik:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr5234	Chr17:95081887-95081933 (+)	21,987 bp