1700061E18Rik Gene Detail

Summary

• Symbol
  1700061E18Rik
• Name
  RIKEN cDNA 1700061E18 gene

• Feature Type
  lncRNA gene
• IDs
  MGI:1924241
  NCBI Gene: 76991
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr13:41954219-41959349 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 13, 20.63 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  214 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1924241	lncRNA gene	Chr13:41954219-41959349 (+)
129S1/SvImJ	ENSMUSG00200012914	lncRNA gene	Chr13:39227478-39228490 (+)
A/J	ENSMUSG00195035869	lncRNA gene	Chr13:38287361-38288373 (+)
AKR/J	ENSMUSG00220032768	lncRNA gene	Chr13:38074587-38075599 (+)
BALB/cJ	ENSMUSG00180008715	lncRNA gene	Chr13:38593829-38594841 (+)
C3H/HeJ	ENSMUSG00175013754	lncRNA gene	Chr13:38558679-38559691 (+)
C57BL/6NJ	ENSMUSG00215014377	lncRNA gene	Chr13:38695440-38696452 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0002817	antisense lncRNA gene	Chr13:37098078-37099092 (+)
CAST/EiJ	ENSTCUG00005034723	lncRNA gene	Chr13:38593331-38594346 (+)
CBA/J	ENSMUSG00210012058	lncRNA gene	Chr13:38564335-38565347 (+)
DBA/2J	ENSMUSG00185033990	lncRNA gene	Chr13:39358693-39359705 (+)
FVB/NJ	ENSMUSG00205030773	lncRNA gene	Chr13:38313638-38314650 (+)
JF1/MsJ	ENSUMUG00000038566	lncRNA gene	Chr13:38909486-38910498 (+)
LP/J	ENSMUSG00230017302	lncRNA gene	Chr13:48696486-48697498 (+)
NOD/ShiLtJ	ENSMUSG00190012817	lncRNA gene	Chr13:38757950-38758962 (+)
NZO/HlLtJ	ENSMUSG00225036714	lncRNA gene	Chr13:42465531-42466543 (+)
PWK/PhJ	ENSLUMG00010030773	lncRNA gene	Chr13:37749275-37750287 (+)
SPRET/EiJ	ENSMSPG00010010803	lncRNA gene	Chr13:37814871-37815880 (+)
WSB/EiJ	ENSIUOG00005029812	lncRNA gene	Chr13:37896084-37897088 (+)

Homology

• Gene Tree
  1700061E18Rik
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  3 phenotype references
  

• All Mutations and Alleles
  1
• Chemically induced (other)
  1
• Genomic Mutations
  1 involving 1700061E18Rik
• Find Mice (IMSR)
  0 strains or lines available

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  597
• cDNA Data
  1

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  28

• Ensembl
  ENSMUSG00000085759 (Evidence)
• NCBI Gene
  76991

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000085759	Ensembl Gene Model | MGI Sequence Detail	5131	C57BL/6J
transcript	ENSMUST00000154159	Ensembl | MGI Sequence Detail	1670	Not Applicable

Molecular
Reagents

• All nucleic 1

  cDNA 1

  
  

  Microarray probesets 1

References

• Summaries
  All 12

  Phenotypes 3
• Earliest
  J:182573 Roderick TH, Producing and detecting paracentric chromosomal inversions in mice. Mutat Res. 1971 Jan;11(1):59-69
• Latest
  J:80000 The FANTOM Consortium and The RIKEN Genome Exploration Research Group Phase I & II Team, Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Nature. 2002;420:563-573

TSS for 1700061E18Rik:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr119422	Chr13:41954248-41954258 (+)	34 bp