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1700021F13Rik Gene Detail
Summary
  • Symbol
    1700021F13Rik
  • Name
    RIKEN cDNA 1700021F13 gene
  • Synonyms
    linc1405, LncCMRR
  • Feature Type
    lncRNA gene
  • IDs
    MGI:1924176
    NCBI Gene: 76926
  • Alliance
    gene page
  • Transcription Start Sites
    3 TSS
Location &
Maps
more
  • Sequence Map
    Chr5:119943394-119945934 bp, - strand
    From MGI annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 5, Syntenic
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    128 from dbSNP Build 142
  • Strain Annotations
    17
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J no annotation
129S1/SvImJ MGP_129S1SvImJ_G0006792
 lincRNA gene Chr5:123108403-123110919 (-)
A/J MGP_AJ_G0006786
 lincRNA gene Chr5:118032089-118034609 (-)
AKR/J MGP_AKRJ_G0006756
 lincRNA gene Chr5:121847767-121850311 (-)
BALB/cJ MGP_BALBcJ_G0006762
 lincRNA gene Chr5:119454387-119456907 (-)
C3H/HeJ MGP_C3HHeJ_G0006707
 lincRNA gene Chr5:122382315-122384869 (-)
C57BL/6NJ MGP_C57BL6NJ_G0006927
 lincRNA gene Chr5:127753668-127756204 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0006182
 lincRNA gene Chr5:112760490-112763017 (-)
CAST/EiJ MGP_CASTEiJ_G0006630
 lincRNA gene Chr5:121467802-121470338 (-)
CBA/J MGP_CBAJ_G0006689
 lincRNA gene Chr5:132720396-132722934 (-)
DBA/2J MGP_DBA2J_G0006709
 lincRNA gene Chr5:118134609-118137125 (-)
FVB/NJ MGP_FVBNJ_G0006733
 lincRNA gene Chr5:117035528-117038068 (-)
LP/J MGP_LPJ_G0006793
 lincRNA gene Chr5:123586128-123588636 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0006716
 lincRNA gene Chr5:136733893-136736433 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0006929
 lincRNA gene Chr5:121415363-121417917 (-)
PWK/PhJ MGP_PWKPhJ_G0006569
 lincRNA gene Chr5:116877930-116880549 (-)
SPRET/EiJ MGP_SPRETEiJ_G0006475
 lincRNA gene Chr5:119059233-119061733 (-)
WSB/EiJ MGP_WSBEiJ_G0006681
 lincRNA gene Chr5:122004014-122006544 (-)



Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    10 phenotypes from 1 allele in 1 genetic background
    6 phenotype references
Phenotype Overview

adipose tissue
behavior/neurological
cardiovascular system
cellular
craniofacial
digestive/alimentary system
embryo
endocrine/exocrine glands
growth/size/body
hearing/vestibular/ear
hematopoietic system
homeostasis/metabolism
integument
immune system
limbs/digits/tail
liver/biliary system
mortality/aging
muscle
nervous system
pigmentation
renal/urinary system
reproductive system
respiratory system
skeleton
taste/olfaction
neoplasm
vision/eye

Click cells to view annotations.
Mice homozygous for a knock-out allele exhibit partial embryonic lethality and defects in early heart development, including thin myocardium and decreased fetal cardiomyocyte number, leading to increased myocardial fiber size, myocardial hypertrophy, and decreased cardiac function in adulthood.
Gene Ontology
(GO)
Classifications
less
Molecular Function

No experimental evidence to support Molecular Function annotation, following literature review. See J:73796.
Biological Process

No experimental evidence to support Biological Process annotation, following literature review. See J:73796.
Cellular Component

No experimental evidence to support Cellular Component annotation, following literature review. See J:73796.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    725
  • Tissues
    16
  • cDNA Data
    2
  • Literature Summary
    2
  • Comparison Matrix
    Gene Expression + Phenotype
    • Sequences &
    Gene Models
    less
    • All Sequences
      18
    Representative SequencesLengthStrain/SpeciesFlank
    transcript AK006202 GenBank | ENA | DDBJ | MGI Sequence Detail 470 C57BL/6J  
    For the selected sequence
    Molecular
    Reagents
    less
    • All nucleic 4
      cDNA 2
      Primer pair 1
      Other 1
    References
    more
    • Summaries
      All 13
      Developmental Gene Expression 2
      Phenotypes 6
    • Earliest
      J:134667 Roderick TH, et al., Two radiation-induced chromosomal inversions in mice (Mus musculus). Proc Natl Acad Sci U S A. 1970 Oct;67(2):961-7
    • Latest
      J:344873 Yang Y, et al., LncCMRR Plays an Important Role in Cardiac Differentiation by Regulating the Purb/Flk1 Axis. Stem Cells. 2023 Jan 30;41(1):11-25
    Contributing Projects:
    Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
    Citing These Resources
    Funding Information
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    Send questions and comments to User Support.     		last database update
    03/25/2025
    MGI 6.24     		The Jackson Laboratory