4930469K13Rik MGI Mouse Gene Detail - MGI:1924124

Symbol

4930469K13Rik
Name

RIKEN cDNA 4930469K13 gene

Feature Type

protein coding gene

BioType Conflict
IDs

MGI:1924124
NCBI Gene: 76874
Alliance

gene page
Transcription Start Sites

4 TSS

Sequence Map

Chr11:33923961-34048554 bp, - strand
From NCBI annotation of GRCm39
View this region in JBrowse
Genome Browsers

Ensembl | UCSC | NCBI

Genetic Map

Chromosome 11, 19.33 cM
Mapping Data

1 experiment

SNPs within 2kb

535 from dbSNP Build 142
Strain Annotations

17

For selected strains:

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1924124	protein coding gene	Chr11:33923961-34048554 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0015165	unclassified non-coding RNA gene	Chr11:32306733-32428464 (-)
A/J	MGP_AJ_G0015139	unclassified non-coding RNA gene	Chr11:31077564-31197593 (-)
AKR/J	MGP_AKRJ_G0015102	unclassified non-coding RNA gene	Chr11:32041135-32167401 (-)
BALB/cJ	MGP_BALBcJ_G0015101	unclassified non-coding RNA gene	Chr11:31257067-31379860 (-)
C3H/HeJ	MGP_C3HHeJ_G0014925	unclassified non-coding RNA gene	Chr11:31991853-32118529 (-)
C57BL/6NJ	MGP_C57BL6NJ_G0015558	unclassified non-coding RNA gene	Chr11:33340482-33463617 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	MGP_CASTEiJ_G0014478	unclassified non-coding RNA gene	Chr11:32100066-32225943 (-)
CBA/J	MGP_CBAJ_G0014904	unclassified non-coding RNA gene	Chr11:34996866-35130273 (-)
DBA/2J	MGP_DBA2J_G0014997	unclassified non-coding RNA gene	Chr11:30845081-30963728 (-)
FVB/NJ	MGP_FVBNJ_G0015009	unclassified non-coding RNA gene	Chr11:30667854-30795962 (-)
LP/J	MGP_LPJ_G0015078	unclassified non-coding RNA gene	Chr11:32578915-32698051 (-)
NOD/ShiLtJ	MGP_NODShiLtJ_G0015035	unclassified non-coding RNA gene	Chr11:35894331-36019248 (-)
NZO/HlLtJ	MGP_NZOHlLtJ_G0015597	unclassified non-coding RNA gene	Chr11:32199203-32326767 (-)
PWK/PhJ	MGP_PWKPhJ_G0014270	unclassified non-coding RNA gene	Chr11:31035809-31157984 (-)
SPRET/EiJ	MGP_SPRETEiJ_G0014057	unclassified non-coding RNA gene	Chr11:31932541-32059428 (-)
WSB/EiJ	MGP_WSBEiJ_G0014581	unclassified non-coding RNA gene	Chr11:31831927-31963329 (-)

Human Ortholog

C5orf58, chromosome 5 open reading frame 58

Vertebrate Orthologs

1

Vertebrate Orthology Source

Alliance of Genome Resources

Human Ortholog

C5orf58, chromosome 5 open reading frame 58
Links

HGNC:37272

NCBI Gene ID: 133874

neXtProt AC: NX_C9J3I9

UniProt: C9J3I9
Chr Location

5q35.1; chr5:170229104-170252575 (+) GRCh38

MGI Vertebrate Homology

4930469K13Rik stringent orthology
1 human;1 mouse
HCOP

vertebrate homology predictions: C5orf58
Gene Tree

4930469K13Rik

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Phenotype Summary

3 phenotype references

All Mutations and Alleles

1
Chemically induced (other)

1
Genomic Mutations

1 involving 4930469K13Rik
Find Mice (IMSR)

0 strains or lines available

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Molecular Function

No experimental evidence to support Molecular Function annotation, following literature review. See J:73796.

Biological Process

No experimental evidence to support Biological Process annotation, following literature review. See J:73796.

Cellular Component

No experimental evidence to support Cellular Component annotation, following literature review. See J:73796.

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Expression Overview

GXD's primary emphasis is on endogenous gene expression during development. Click on grid cells to view annotations.

Blue cells = expressed in wild-type.
Gray triangles = other expression annotations only
(e.g. absence of expression or data from mutants).

early conceptus	embryo ectoderm	embryo endoderm	embryo mesoderm	embryo mesenchyme	extraembryonic component	alimentary system	auditory system	branchial arches	cardiovascular system	connective tissue	endocrine system	exocrine system	hemolymphoid system	integumental system	limbs	liver and biliary system	musculoskeletal system	nervous system	olfactory system	reproductive system	respiratory system	urinary system	visual system

Click cells to view annotations.

Assay Results

706
cDNA Data

2

Tissue x Stage Matrix

Other Mouse Links

GEO

Expression Atlas

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All Sequences

28
RefSeq

1
UniProt

2

Ensembl

ENSMUSG00000085684 (Evidence)
NCBI Gene

76874

			Length	Strain/Species	Flank
genomic	76874	NCBI Gene Model \| MGI Sequence Detail	124594	C57BL/6J	± kb
transcript	NR_155520	RefSeq \| MGI Sequence Detail	698	C57BL/6
polypeptide	A0A286YDB2	UniProt \| EBI \| MGI Sequence Detail	92	Not Applicable

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UniProt

2 Sequences

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All nucleic 2

cDNA 2

Summaries

All 12

Phenotypes 3
Earliest

J:137335 Roderick TH, Chromosomal inversions in studies of mammalian mutagenesis. Genetics. 1979 May;92(1 Pt 1 Suppl):s121-6
Latest

J:80000 The FANTOM Consortium and The RIKEN Genome Exploration Research Group Phase I & II Team, Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Nature. 2002;420:563-573

TSS for 4930469K13Rik:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr107358	Chr11:34048557-34048591 (-)	-20 bp
Tssr107357	Chr11:34048539-34048556 (-)	6 bp
Tssr107356	Chr11:34025077-34025122 (-)	23,454 bp
Tssr107355	Chr11:33958910-33958919 (-)	89,639 bp

Contributing Projects: Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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