2900052L18Rik MGI Mouse Gene Detail - MGI:1924085

Symbol

2900052L18Rik
Name

RIKEN cDNA 2900052L18 gene

Feature Type

lncRNA gene
IDs

MGI:1924085
NCBI Gene: 102640779
Alliance

genome feature page
Transcription Start Sites

4 TSS

Sequence Map

Chr11:120116355-120122443 bp, - strand
From NCBI annotation of GRCm39
View this region in JBrowse
Genome Browsers

Ensembl | UCSC | NCBI

Genetic Map

Chromosome 11, 83.96 cM
Mapping Data

1 experiment

SNPs within 2kb

162 from dbSNP Build 142
Strain Annotations

31

For selected strains:

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1924085	lncRNA gene	Chr11:120105901-120122467 (-)
129S1/SvImJ	ENSMUSG00200052021	protein coding gene	Chr11:117483181-117485375 (-)
129S1/SvImJ	ENSMUSG00200052759	lncRNA gene	Chr11:117480138-117485388 (-)
A/J	ENSMUSG00195026203	protein coding gene	Chr11:117158204-117160399 (-)
A/J	ENSMUSG00195032108	lncRNA gene	Chr11:117155161-117160412 (-)
AKR/J	ENSMUSG00220026786	protein coding gene	Chr11:117308609-117310803 (-)
AKR/J	ENSMUSG00220031416	lncRNA gene	Chr11:117305566-117310816 (-)
BALB/cJ	ENSMUSG00180052243	lncRNA gene	Chr11:117447906-117453138 (-)
BALB/cJ	ENSMUSG00180047849	protein coding gene	Chr11:117450931-117453125 (-)
C3H/HeJ	ENSMUSG00175047919	lncRNA gene	Chr11:117405814-117411054 (-)
C3H/HeJ	ENSMUSG00175032873	protein coding gene	Chr11:117408847-117411041 (-)
C57BL/6NJ	ENSMUSG00215043597	protein coding gene	Chr11:116978742-116980936 (-)
C57BL/6NJ	ENSMUSG00215047090	lncRNA gene	Chr11:116975698-116980949 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0013361	unclassified non-coding RNA gene	Chr11:116139484-116141268 (-)
CAST/EiJ	ENSTCUG00005037017	lncRNA gene	Chr11:116834364-116839626 (-)
CBA/J	ENSMUSG00210050457	protein coding gene	Chr11:117122876-117125070 (-)
CBA/J	ENSMUSG00210050621	lncRNA gene	Chr11:117119843-117125083 (-)
DBA/2J	ENSMUSG00185026960	lncRNA gene	Chr11:117433000-117438240 (-)
DBA/2J	ENSMUSG00185022066	protein coding gene	Chr11:117436033-117438227 (-)
FVB/NJ	ENSMUSG00205044578	protein coding gene	Chr11:117283738-117285932 (-)
FVB/NJ	ENSMUSG00205046498	lncRNA gene	Chr11:117280705-117285945 (-)
JF1/MsJ	ENSUMUG00000053444	lncRNA gene	Chr11:117732172-117737422 (-)
LP/J	ENSMUSG00230051085	lncRNA gene	Chr11:118498789-118504029 (-)
LP/J	ENSMUSG00230047502	protein coding gene	Chr11:118501822-118504016 (-)
NOD/ShiLtJ	ENSMUSG00190050350	lncRNA gene	Chr11:117504117-117509367 (-)
NOD/ShiLtJ	ENSMUSG00190032193	protein coding gene	Chr11:117507160-117509354 (-)
NZO/HlLtJ	ENSMUSG00225053965	lncRNA gene	Chr11:120647750-120653000 (-)
NZO/HlLtJ	ENSMUSG00225050220	protein coding gene	Chr11:120650793-120652987 (-)
PWK/PhJ	ENSLUMG00010024294	lncRNA gene	Chr11:117249533-117254776 (-)
SPRET/EiJ	ENSMSPG00010043144	lncRNA gene	Chr11:117823869-117829106 (-)
WSB/EiJ	ENSIUOG00005049301	lncRNA gene	Chr11:117246277-117251518 (-)

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Gene Tree

2900052L18Rik

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Phenotype Summary

2 phenotype references

All Mutations and Alleles

7
Gene trapped

7
Find Mice (IMSR)

10 strains or lines available

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Expression Overview

GXD's primary emphasis is on endogenous gene expression during development. Click on grid cells to view annotations.

Blue cells = expressed in wild-type.
Gray triangles = other expression annotations only
(e.g. absence of expression or data from mutants).

early conceptus	embryo ectoderm	embryo endoderm	embryo mesoderm	embryo mesenchyme	extraembryonic component	alimentary system	auditory system	branchial arches	cardiovascular system	connective tissue	endocrine system	exocrine system	hemolymphoid system	integumental system	limbs	liver and biliary system	musculoskeletal system	nervous system	olfactory system	reproductive system	respiratory system	urinary system	visual system

Click cells to view annotations.

Assay Results

597
cDNA Data

10

Tissue x Stage Matrix

Other Mouse Links

GEO

Expression Atlas

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All Sequences

69
RefSeq

1
UniProt

2

Ensembl

ENSMUSG00000043993 (Evidence)
NCBI Gene

102640779

			Length	Strain/Species	Flank
genomic	102640779	NCBI Gene Model \| MGI Sequence Detail	6089	C57BL/6J	± kb
transcript	NR_151480	RefSeq \| MGI Sequence Detail	5893	C57BL/6
polypeptide	Q8BSB8	UniProt \| EBI \| MGI Sequence Detail	110	Not Applicable

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UniProt

2 Sequences

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All nucleic 11

cDNA 11

Microarray probesets 2

Summaries

All 13

Phenotypes 2
Earliest

J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
Latest

J:142754 Hansen GM, et al., Large-scale gene trapping in C57BL/6N mouse embryonic stem cells. Genome Res. 2008 Oct;18(10):1670-9

TSS for 2900052L18Rik:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr112280	Chr11:120122454-120122465 (-)	-17 bp
Tssr112279	Chr11:120122404-120122433 (-)	24 bp
Tssr112278	Chr11:120122343-120122367 (-)	88 bp
Tssr112277	Chr11:120122291-120122303 (-)	146 bp

Contributing Projects: Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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