Srrm4os Gene Detail

Summary

• Symbol
  Srrm4os
• Name
  serine/arginine repetitive matrix 4, opposite strand
• Synonyms
  2410137F16Rik

• Feature Type
  antisense lncRNA gene
  BioType Conflict
  
• IDs
  MGI:1924048
  NCBI Gene: 76798
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr5:116576781-116603546 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 5, 56.45 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  796 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1924048	antisense lncRNA gene	Chr5:116571312-116603546 (+)
129S1/SvImJ	ENSMUSG00200023882	lncRNA gene	Chr5:110317591-110344342 (+)
A/J	ENSMUSG00195040970	lncRNA gene	Chr5:109839984-109866730 (+)
AKR/J	ENSMUSG00220052539	lncRNA gene	Chr5:109347308-109374076 (+)
BALB/cJ	ENSMUSG00180047384	lncRNA gene	Chr5:109968353-109995117 (+)
C3H/HeJ	ENSMUSG00175033071	lncRNA gene	Chr5:111956090-111982859 (+)
C57BL/6NJ	ENSMUSG00215038370	lncRNA gene	Chr5:109978688-110005469 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0003746	antisense lncRNA gene	Chr5:109399569-109427060 (+)
CAST/EiJ	ENSTCUG00005034363	lncRNA gene	Chr5:109162882-109188921 (+)
CBA/J	ENSMUSG00210046306	lncRNA gene	Chr5:110707097-110733868 (+)
DBA/2J	ENSMUSG00185055599	lncRNA gene	Chr5:113775679-113802420 (+)
FVB/NJ	ENSMUSG00205052244	lncRNA gene	Chr5:109614321-109641131 (+)
JF1/MsJ	ENSUMUG00000053615	lncRNA gene	Chr5:116591461-116618340 (+)
LP/J	ENSMUSG00230049547	lncRNA gene	Chr5:117855650-117882391 (+)
NOD/ShiLtJ	ENSMUSG00190050432	lncRNA gene	Chr5:109644466-109671213 (+)
NZO/HlLtJ	ENSMUSG00225016850	lncRNA gene	Chr5:125524997-125551737 (+)
PWK/PhJ	ENSLUMG00010041776	lncRNA gene	Chr5:108481955-108508659 (+)
SPRET/EiJ	ENSMSPG00010047421	lncRNA gene	Chr5:111777887-111805040 (+)
WSB/EiJ	ENSIUOG00005044564	lncRNA gene	Chr5:112348231-112375008 (+)

Homology

• Gene Tree
  Srrm4os
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  8 phenotype references
  

• All Mutations and Alleles
  15
• Chemically induced (other)
  1
• Gene trapped
  13
• Radiation induced
  1
• Genomic Mutations
  2 involving Srrm4os
• Find Mice (IMSR)
  5 strains or lines available

Expression

• Assay Results
  597
• cDNA Data
  3

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  37
• RefSeq
  1

• Ensembl
  ENSMUSG00000086219 (Evidence)
• NCBI Gene
  76798

Representative Sequences			Length	Strain/Species
genomic	76798	NCBI Gene Model | MGI Sequence Detail	26766	C57BL/6J
transcript	NR_015595	RefSeq | MGI Sequence Detail	3358	C57BL/6

Molecular
Reagents

• All nucleic 3

  cDNA 3

  
  

  Microarray probesets 1

References

• Summaries
  All 18

  Phenotypes 8
• Earliest
  J:134667 Roderick TH, et al., Two radiation-induced chromosomal inversions in mice (Mus musculus). Proc Natl Acad Sci U S A. 1970 Oct;67(2):961-7
• Latest
  J:142754 Hansen GM, et al., Large-scale gene trapping in C57BL/6N mouse embryonic stem cells. Genome Res. 2008 Oct;18(10):1670-9

TSS for Srrm4os:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr48345	Chr5:116576771-116576782 (+)	-4 bp