Man2c1os Gene Detail

Summary

• Symbol
  Man2c1os
• Name
  mannosidase, alpha, class 2C, member 1, opposite strand
• Synonyms
  2410133F24Rik

• Feature Type
  antisense lncRNA gene
  BioType Conflict
  
• IDs
  MGI:1924044
  NCBI Gene: 76794
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr9:57037266-57038574 bp, - strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 9, 30.89 cM
• Mapping Data
  2 experiments

Strain
Comparison

• SNPs within 2kb
  82 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1924044	antisense lncRNA gene	Chr9:57007234-57038594 (-)
129S1/SvImJ	ENSMUSG00200036121	lncRNA gene	Chr9:54121516-54152863 (-)
A/J	ENSMUSG00195041545	lncRNA gene	Chr9:53820295-53851648 (-)
AKR/J	ENSMUSG00220031217	lncRNA gene	Chr9:53957545-53988895 (-)
BALB/cJ	ENSMUSG00180021243	lncRNA gene	Chr9:53946326-53977680 (-)
C3H/HeJ	ENSMUSG00175022469	lncRNA gene	Chr9:53947105-53978455 (-)
C57BL/6NJ	ENSMUSG00215032473	lncRNA gene	Chr9:53939688-53971041 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0004198	antisense lncRNA gene	Chr9:53795516-53827719 (-)
CAST/EiJ	ENSTCUG00005021697	lncRNA gene	Chr9:53846525-53877772 (-)
CBA/J	ENSMUSG00210042483	lncRNA gene	Chr9:54048820-54080172 (-)
DBA/2J	ENSMUSG00185044604	lncRNA gene	Chr9:54077450-54108801 (-)
FVB/NJ	ENSMUSG00205045065	lncRNA gene	Chr9:54390236-54421588 (-)
JF1/MsJ	ENSUMUG00000050765	lncRNA gene	Chr9:54098457-54129852 (-)
LP/J	ENSMUSG00230039244	lncRNA gene	Chr9:54321307-54352654 (-)
NOD/ShiLtJ	ENSMUSG00190045800	lncRNA gene	Chr9:54145508-54176857 (-)
NZO/HlLtJ	ENSMUSG00225028651	lncRNA gene	Chr9:54358700-54390050 (-)
PWK/PhJ	ENSLUMG00010039435	lncRNA gene	Chr9:54060789-54092181 (-)
SPRET/EiJ	ENSMSPG00010028129	lncRNA gene	Chr9:55091396-55121925 (-)
WSB/EiJ	ENSIUOG00005042495	lncRNA gene	Chr9:53559581-53590926 (-)

Homology

• Gene Tree
  Man2c1os
  

Expression

• Assay Results
  597
• cDNA Data
  2

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  30
• RefSeq
  1

• Ensembl
  ENSMUSG00000086728 (Evidence)
• NCBI Gene
  76794

Representative Sequences			Length	Strain/Species
genomic	76794	NCBI Gene Model | MGI Sequence Detail	1309	C57BL/6J
transcript	NR_102289	RefSeq | MGI Sequence Detail	888	C57BL/6

Molecular
Reagents

• All nucleic 2

  cDNA 2

  
  

  Microarray probesets 1

Other
Accession IDs

MGI:2143153

References

• Summaries
  All 11
• Earliest
  J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
• Latest
  J:80000 The FANTOM Consortium and The RIKEN Genome Exploration Research Group Phase I & II Team, Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Nature. 2002;420:563-573

TSS for Man2c1os:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr89754	Chr9:57038517-57038536 (-)	47 bp