2210406O10Rik Gene Detail

Summary

• Symbol
  2210406O10Rik
• Name
  RIKEN cDNA 2210406O10 gene

• Feature Type
  lncRNA gene
• IDs
  MGI:1923960
  NCBI Gene: 76710
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr5:36604955-36622198 bp, - strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 5, 19.14 cM, cytoband B2
• Mapping Data
  3 experiments

Strain
Comparison

• SNPs within 2kb
  562 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1923960	lncRNA gene	Chr5:36604951-36622882 (-)
129S1/SvImJ	ENSMUSG00200033827	lncRNA gene	Chr5:32074639-32092028 (-)
A/J	ENSMUSG00195029876	lncRNA gene	Chr5:31547578-31565504 (-)
AKR/J	ENSMUSG00220002673	lncRNA gene	Chr5:31574159-31592082 (-)
BALB/cJ	ENSMUSG00180024653	lncRNA gene	Chr5:31350425-31368349 (-)
C3H/HeJ	ENSMUSG00175020103	lncRNA gene	Chr5:33334684-33352604 (-)
C57BL/6NJ	ENSMUSG00215006108	lncRNA gene	Chr5:32071880-32089268 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0006013	lincRNA gene	Chr5:31381651-31403299 (-)
CAST/EiJ	ENSTCUG00005024823	lncRNA gene	Chr5:31549462-31574188 (-)
CBA/J	ENSMUSG00210005370	lncRNA gene	Chr5:32298710-32316632 (-)
DBA/2J	ENSMUSG00185018576	lncRNA gene	Chr5:34166300-34183993 (-)
FVB/NJ	ENSMUSG00205020170	lncRNA gene	Chr5:31050362-31068060 (-)
JF1/MsJ	ENSUMUG00000054282	lncRNA gene	Chr5:38766430-38790856 (-)
LP/J	ENSMUSG00230048592	lncRNA gene	Chr5:38778220-38795602 (-)
NOD/ShiLtJ	ENSMUSG00190003449	lncRNA gene	Chr5:31349726-31367100 (-)
NZO/HlLtJ	ENSMUSG00225018129	lncRNA gene	Chr5:43981553-43998941 (-)
PWK/PhJ	ENSLUMG00010022976	lncRNA gene	Chr5:31453366-31472383 (-)
SPRET/EiJ	ENSMSPG00010038766	lncRNA gene	Chr5:32668677-32687102 (-)
WSB/EiJ	ENSIUOG00005018748	lncRNA gene	Chr5:34264882-34282662 (-)

Homology

• Gene Tree
  2210406O10Rik
  

Human Diseases

• References
  1 with disease annotations

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  23 phenotype references
  

• All Mutations and Alleles
  11
• Chemically induced (ENU)
  1
• Chemically induced (other)
  2
• Gene trapped
  3
• Radiation induced
  4
• Spontaneous
  1
• Genomic Mutations
  8 involving 2210406O10Rik
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597
• cDNA Data
  4

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  47
• RefSeq
  3
• UniProt
  1

• Ensembl
  ENSMUSG00000039563 (Evidence)
• NCBI Gene
  76710

Representative Sequences			Length	Strain/Species
genomic	76710	NCBI Gene Model | MGI Sequence Detail	17244	C57BL/6J
transcript	NR_126488	RefSeq | MGI Sequence Detail	1231	C57BL/6
polypeptide	Q9CVB1	UniProt | EBI | MGI Sequence Detail	113	Not Applicable

Protein
Information

• UniProt
  1 Sequence

Molecular
Reagents

• All nucleic 4

  cDNA 4

  
  

  Microarray probesets 5

References

• Summaries
  All 38

  Diseases 1

  Phenotypes 23
• Earliest
  J:5021 Batchelor AL, et al., A comparison of the mutagenic effectiveness of chronic neutron- and gamma-irradiation of mouse spermatogonia. Mutat Res. 1966 Jun;3(3):218-29
• Latest
  J:125425 Howell GR, et al., Mutation of a ubiquitously expressed mouse transmembrane protein (Tapt1) causes specific skeletal homeotic transformations. Genetics. 2007 Feb;175(2):699-707