1500002F19Rik Gene Detail

Summary

• Symbol
  1500002F19Rik
• Name
  RIKEN cDNA 1500002F19 gene
• Synonyms
  BC002195

• Feature Type
  lncRNA gene
• IDs
  MGI:1923933
  NCBI Gene: 76683
• Alliance
  genome feature page
• Transcription Start Sites
  5 TSS

Location &
Maps

• Sequence Map
  Chr7:132476346-132533024 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 7, 76.32 cM
• Mapping Data
  2 experiments

Strain
Comparison

• SNPs within 2kb
  1397 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1923933	lncRNA gene	Chr7:132476343-132535739 (-)
129S1/SvImJ	ENSMUSG00200027565	lncRNA gene	Chr7:119011344-119068309 (-)
A/J	ENSMUSG00195047481	lncRNA gene	Chr7:123482433-123538910 (-)
AKR/J	ENSMUSG00220016870	lncRNA gene	Chr7:116944155-117001117 (-)
BALB/cJ	ENSMUSG00180013866	lncRNA gene	Chr7:120188209-120245174 (-)
C3H/HeJ	ENSMUSG00175019049	lncRNA gene	Chr7:120914514-120971475 (-)
C57BL/6NJ	ENSMUSG00215037163	lncRNA gene	Chr7:120192589-120249066 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0006638	lincRNA gene	Chr7:135091324-135132299 (-)
CAST/EiJ	ENSTCUG00005049755	lncRNA gene	Chr7:123501202-123555888 (-)
CBA/J	ENSMUSG00210023865	lncRNA gene	Chr7:120676445-120738709 (-)
DBA/2J	ENSMUSG00185024398	lncRNA gene	Chr7:124992706-125049666 (-)
FVB/NJ	ENSMUSG00205045271	lncRNA gene	Chr7:120627573-120684049 (-)
JF1/MsJ	ENSUMUG00000049762	lncRNA gene	Chr7:130002590-130057220 (-)
LP/J	ENSMUSG00230053208	lncRNA gene	Chr7:131122848-131179122 (-)
NOD/ShiLtJ	ENSMUSG00190018860	lncRNA gene	Chr7:120816370-120872839 (-)
NZO/HlLtJ	ENSMUSG00225013127	lncRNA gene	Chr7:129350116-129407077 (-)
PWK/PhJ	ENSLUMG00010044994	lncRNA gene	Chr7:119194182-119248728 (-)
SPRET/EiJ	ENSMSPG00010013697	lncRNA gene	Chr7:120500521-120548652 (-)
WSB/EiJ	ENSIUOG00005034235	lncRNA gene	Chr7:121506920-121563477 (-)

Homology

• Gene Tree
  1500002F19Rik
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  1 phenotype reference
  

• All Mutations and Alleles
  1
• Gene trapped
  1
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597
• cDNA Data
  2

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  40
• RefSeq
  5
• UniProt
  1

• Ensembl
  ENSMUSG00000097595 (Evidence)
• NCBI Gene
  76683

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000097595	Ensembl Gene Model | MGI Sequence Detail	56679	C57BL/6J
transcript	ENSMUST00000180905	Ensembl | MGI Sequence Detail	793	Not Applicable
polypeptide	Q99LW3	UniProt | EBI | MGI Sequence Detail	28	Not Applicable

Protein
Information

• UniProt
  1 Sequence

Molecular
Reagents

• All nucleic 2

  cDNA 2

  
  

  Microarray probesets 3

Other
Accession IDs

MGI:3641907

References

• Summaries
  All 13

  Phenotypes 1
• Earliest
  J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
• Latest
  J:80000 The FANTOM Consortium and The RIKEN Genome Exploration Research Group Phase I & II Team, Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Nature. 2002;420:563-573

TSS for 1500002F19Rik:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr75235	Chr7:132533877-132533890 (-)	-860 bp
Tssr75234	Chr7:132512731-132512737 (-)	20,290 bp
Tssr75233	Chr7:132512711-132512712 (-)	20,312 bp
Tssr75232	Chr7:132512687-132512696 (-)	20,332 bp
Tssr75231	Chr7:132490369-132490386 (-)	42,646 bp