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5330411J11Rik Gene Detail
Summary
  • Symbol
    5330411J11Rik
  • Name
    RIKEN cDNA 5330411J11 gene
Location &
Maps
more
  • Sequence Map
    Chr2:59212837-59217026 bp, - strand
    From NCBI annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 2, 33.72 cM
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    304 from dbSNP Build 142
  • Strain Annotations
    19
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1923926
 lncRNA gene Chr2:59212837-59217815 (-)
129S1/SvImJ ENSMUSG00200003127
 lncRNA gene Chr2:56278119-56283088 (-)
A/J ENSMUSG00195005243
 lncRNA gene Chr2:56398872-56403841 (-)
AKR/J ENSMUSG00220007424
 lncRNA gene Chr2:56500806-56505775 (-)
BALB/cJ ENSMUSG00180021462
 lncRNA gene Chr2:56355137-56360106 (-)
C3H/HeJ ENSMUSG00175014143
 lncRNA gene Chr2:56423757-56428726 (-)
C57BL/6NJ ENSMUSG00215009457
 lncRNA gene Chr2:56408548-56413517 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0013555
 unclassified non-coding RNA gene Chr2:54228633-54233623 (-)
CAST/EiJ ENSTCUG00005023066
 lncRNA gene Chr2:55756855-55761823 (-)
CBA/J ENSMUSG00210035290
 lncRNA gene Chr2:56443151-56448120 (-)
DBA/2J ENSMUSG00185008333
 lncRNA gene Chr2:56299147-56304116 (-)
FVB/NJ ENSMUSG00205021187
 lncRNA gene Chr2:55939966-55944935 (-)
JF1/MsJ ENSUMUG00000023943
 lncRNA gene Chr2:55992472-55997422 (-)
LP/J ENSMUSG00230001850
 lncRNA gene Chr2:58161919-58166888 (-)
NOD/ShiLtJ ENSMUSG00190044868
 lncRNA gene Chr2:56384245-56389214 (-)
NZO/HlLtJ ENSMUSG00225001159
 lncRNA gene Chr2:65887779-65892750 (-)
PWK/PhJ ENSLUMG00010005570
 lncRNA gene Chr2:56144251-56149201 (-)
SPRET/EiJ ENSMSPG00010012066
 lncRNA gene Chr2:57321962-57326982 (-)
WSB/EiJ ENSIUOG00005028042
 lncRNA gene Chr2:56427132-56432103 (-)



Homology
less
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    3 phenotype references
  • All Mutations and Alleles
    2
  • Chemically induced (other)
    1
  • Gene trapped
    1
  • Genomic Mutations
    1 involving 5330411J11Rik
  • Find Mice (IMSR)
    2 strains or lines available
Gene Ontology
(GO)
Classifications
less
Molecular Function

No experimental evidence to support Molecular Function annotation, following literature review. See J:73796.
Biological Process

No experimental evidence to support Biological Process annotation, following literature review. See J:73796.
Cellular Component

No experimental evidence to support Cellular Component annotation, following literature review. See J:73796.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    597
  • cDNA Data
    1
Sequences &
Gene Models
less
  • All Sequences
    28
  • RefSeq
    1
Representative SequencesLengthStrain/SpeciesFlank
genomic 76676 NCBI Gene Model | MGI Sequence Detail 4190 C57BL/6J ±  kb
transcript NR_040510 RefSeq | MGI Sequence Detail 1644 C57BL/6  
For the selected sequence
Molecular
Reagents
less
  • All nucleic 1
    cDNA 1

    Microarray probesets 1
References
more
  • Summaries
    All 13
    Phenotypes 3
  • Earliest
    J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
  • Latest
    J:80000 The FANTOM Consortium and The RIKEN Genome Exploration Research Group Phase I & II Team, Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Nature. 2002;420:563-573
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
09/08/2026
MGI 6.24 		The Jackson Laboratory