About   Help   FAQ
Hoxd3os1 Gene Detail
Summary
  • Symbol
    Hoxd3os1
  • Name
    homeobox D3, opposite strand 1
  • Synonyms
    1700064D17Rik, 1700109F18Rik
Location &
Maps
more
  • Sequence Map
    Chr2:74540388-74546474 bp, - strand
    From NCBI annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 2, 44.13 cM, cytoband D
  • Mapping Data
    3 experiments
Strain
Comparison
more
  • SNPs within 2kb
    15 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1923875
 antisense lncRNA gene Chr2:74533592-74546474 (-)
129S1/SvImJ MGP_129S1SvImJ_G0003594
 antisense lncRNA gene Chr2:75017424-75029953 (-)
A/J MGP_AJ_G0003576
 antisense lncRNA gene Chr2:72084549-72097276 (-)
AKR/J MGP_AKRJ_G0003554
 antisense lncRNA gene Chr2:74037766-74050631 (-)
BALB/cJ MGP_BALBcJ_G0003565
 antisense lncRNA gene Chr2:72271175-72284540 (-)
C3H/HeJ MGP_C3HHeJ_G0003512
 antisense lncRNA gene Chr2:74225604-74238682 (-)
C57BL/6NJ MGP_C57BL6NJ_G0003703
 antisense lncRNA gene Chr2:77253189-77266988 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0003212
 antisense lncRNA gene Chr2:69507774-69520494 (-)
CAST/EiJ MGP_CASTEiJ_G0003475
 antisense lncRNA gene Chr2:74542586-74555777 (-)
CBA/J MGP_CBAJ_G0003509
 antisense lncRNA gene Chr2:80072712-80089807 (-)
DBA/2J MGP_DBA2J_G0003517
 antisense lncRNA gene Chr2:71691095-71704768 (-)
FVB/NJ MGP_FVBNJ_G0003537
 antisense lncRNA gene Chr2:71081256-71093243 (-)
LP/J MGP_LPJ_G0003590
 antisense lncRNA gene Chr2:74881555-74894333 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0003525
 antisense lncRNA gene Chr2:81986334-82000691 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0003705
 antisense lncRNA gene Chr2:74153300-74167145 (-)
PWK/PhJ MGP_PWKPhJ_G0003430
 antisense lncRNA gene Chr2:71622002-71635222 (-)
SPRET/EiJ MGP_SPRETEiJ_G0003374
 antisense lncRNA gene Chr2:74387116-74399814 (-)
WSB/EiJ MGP_WSBEiJ_G0003509
 antisense lncRNA gene Chr2:74589236-74604844 (-)



Homology
less
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    46 phenotype references
  • All Mutations and Alleles
    30
  • Chemically induced (other)
    1
  • Radiation induced
    1
  • Spontaneous
    1
  • Targeted
    27
  • Genomic Mutations
    30 involving Hoxd3os1
  • Find Mice (IMSR)
    0 strains or lines available
Gene Ontology
(GO)
Classifications
less
Molecular Function

No experimental evidence to support Molecular Function annotation, following literature review. See J:73796.
Biological Process

No experimental evidence to support Biological Process annotation, following literature review. See J:73796.
Cellular Component

No experimental evidence to support Cellular Component annotation, following literature review. See J:73796.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    715
  • Tissues
    8
  • cDNA Data
    7
  • Literature Summary
    2
Sequences &
Gene Models
less
  • All Sequences
    34
  • RefSeq
    1
  • UniProt
    2
Representative SequencesLengthStrain/SpeciesFlank
genomic 73429 NCBI Gene Model | MGI Sequence Detail 6087 C57BL/6J ±  kb
transcript NR_027899 RefSeq | MGI Sequence Detail 794 C57BL/6  
polypeptide Q8C6K5 UniProt | EBI | MGI Sequence Detail 144 Not Applicable  
For the selected sequence
Protein
Information
less
  • UniProt
    2 Sequences
Molecular
Reagents
less
  • All nucleic 8
    cDNA 7
    Primer pair 1

    Microarray probesets 3
Other
Accession IDs
less
MGI:1920679
References
more
  • Summaries
    All 64
    Developmental Gene Expression 2
    Phenotypes 46
  • Earliest
    J:10491 Davisson MT, et al., The mouse mutation ulnaless on chromosome 2. J Hered. 1990 Mar-Apr;81(2):151-3
  • Latest
    J:309510 Beccari L, et al., Dbx2 regulation in limbs suggests interTAD sharing of enhancers. Dev Dyn. 2021 Sep;250(9):1280-1299
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
Warranty Disclaimer, Privacy Notice, Licensing, & Copyright
Send questions and comments to User Support. 		last database update
04/30/2024
MGI 6.23 		The Jackson Laboratory