1700099I09Rik Gene Detail

Summary

• Symbol
  1700099I09Rik
• Name
  RIKEN cDNA 1700099I09 gene

• Feature Type
  lncRNA gene
• IDs
  MGI:1923874
  NCBI Gene: 76624
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr13:102896763-102898404 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 13, 54.94 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  173 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1923874	lncRNA gene	Chr13:102896720-102915254 (+)
129S1/SvImJ	ENSMUSG00200009170	lncRNA gene	Chr13:97316625-97318267 (+)
A/J	ENSMUSG00195029917	lncRNA gene	Chr13:97922680-97924321 (+)
AKR/J	ENSMUSG00220029850	lncRNA gene	Chr13:96348711-96350352 (+)
BALB/cJ	ENSMUSG00180039834	lncRNA gene	Chr13:98464456-98466097 (+)
C3H/HeJ	ENSMUSG00175018419	lncRNA gene	Chr13:98567048-98568690 (+)
C57BL/6NJ	ENSMUSG00215031029	lncRNA gene	Chr13:98541275-98542916 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0002844	antisense lncRNA gene	Chr13:96390533-96392156 (+)
CAST/EiJ	ENSTCUG00005011724	lncRNA gene	Chr13:97678709-97680339 (+)
CBA/J	ENSMUSG00210011934	lncRNA gene	Chr13:97888003-97889644 (+)
DBA/2J	ENSMUSG00185027034	lncRNA gene	Chr13:101630472-101632114 (+)
FVB/NJ	ENSMUSG00205037044	lncRNA gene	Chr13:97330631-97332273 (+)
JF1/MsJ	ENSUMUG00000033354	lncRNA gene	Chr13:101240070-101241698 (+)
LP/J	ENSMUSG00230008237	lncRNA gene	Chr13:111786427-111788069 (+)
NOD/ShiLtJ	ENSMUSG00190042355	lncRNA gene	Chr13:98226166-98227807 (+)
NZO/HlLtJ	ENSMUSG00225037365	lncRNA gene	Chr13:104144895-104146536 (+)
PWK/PhJ	ENSLUMG00010026482	lncRNA gene	Chr13:97304652-97306276 (+)
SPRET/EiJ	ENSMSPG00010009212	lncRNA gene	Chr13:98695048-98696678 (+)
WSB/EiJ	ENSIUOG00005035932	lncRNA gene	Chr13:97316556-97318198 (+)

Homology

• Gene Tree
  1700099I09Rik
  

Mutations,
Alleles, and
Phenotypes

• Incidental Mutations
  Mutagenetix , APF
• Find Mice (IMSR)
  1 strains or lines available

Expression

• Assay Results
  597
• cDNA Data
  4

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  60
• RefSeq
  2

• Ensembl
  ENSMUSG00000091906 (Evidence)
• NCBI Gene
  76624

Representative Sequences			Length	Strain/Species
genomic	76624	NCBI Gene Model | MGI Sequence Detail	1642	C57BL/6J
transcript	NR_130171	RefSeq | MGI Sequence Detail	818	Not Specified

Molecular
Reagents

• All nucleic 4

  cDNA 4

  
  

  Microarray probesets 1

References

• Summaries
  All 10
• Earliest
  J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
• Latest
  J:80000 The FANTOM Consortium and The RIKEN Genome Exploration Research Group Phase I & II Team, Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Nature. 2002;420:563-573

TSS for 1700099I09Rik:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr120896	Chr13:102896748-102896780 (+)	1 bp