1700087I21Rik Gene Detail

Summary

• Symbol
  1700087I21Rik
• Name
  RIKEN cDNA 1700087I21 gene

• Feature Type
  lncRNA gene
• IDs
  MGI:1923869
  NCBI Gene: 118567337
• Alliance
  genome feature page
• Transcription Start Sites
  4 TSS

Location &
Maps

• Sequence Map
  Chr14:103584003-103687364 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 14, Syntenic
• Mapping Data
  2 experiments

Strain
Comparison

• SNPs within 2kb
  2526 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1923869	lncRNA gene	Chr14:103584003-103687364 (+)
129S1/SvImJ	ENSMUSG00200018099	lncRNA gene	Chr14:92165582-92179158 (+)
A/J	ENSMUSG00195020358	lncRNA gene	Chr14:92268855-92282462 (+)
AKR/J	ENSMUSG00220002484	lncRNA gene	Chr14:91700158-91713756 (+)
BALB/cJ	ENSMUSG00180004610	lncRNA gene	Chr14:91751673-91765271 (+)
C3H/HeJ	ENSMUSG00175014004	lncRNA gene	Chr14:93637284-93650873 (+)
C57BL/6NJ	ENSMUSG00215020129	lncRNA gene	Chr14:91834020-91847622 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005002996	lncRNA gene	Chr14:93271910-93288388 (+)
CBA/J	ENSMUSG00210007897	lncRNA gene	Chr14:92324702-92338300 (+)
DBA/2J	ENSMUSG00185011106	lncRNA gene	Chr14:97504971-97518578 (+)
FVB/NJ	ENSMUSG00205013739	lncRNA gene	Chr14:91457029-91470614 (+)
JF1/MsJ	ENSUMUG00000014532	lncRNA gene	Chr14:108532920-108549393 (+)
LP/J	ENSMUSG00230003939	lncRNA gene	Chr14:109402020-109418482 (+)
NOD/ShiLtJ	ENSMUSG00190009715	lncRNA gene	Chr14:92111381-92124982 (+)
NZO/HlLtJ	ENSMUSG00225025363	lncRNA gene	Chr14:99769957-99783558 (+)
PWK/PhJ	ENSLUMG00010004690	lncRNA gene	Chr14:91376276-91389848 (+)
SPRET/EiJ	ENSMSPG00010009966	lncRNA gene	Chr14:95355566-95369190 (+)
WSB/EiJ	ENSIUOG00005018696	lncRNA gene	Chr14:91326055-91339662 (+)

Homology

• Gene Tree
  1700087I21Rik
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  1
• Chemically induced (other)
  1
• Genomic Mutations
  1 involving 1700087I21Rik
• Find Mice (IMSR)
  0 strains or lines available

Expression

• cDNA Data
  1

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  74

• Ensembl
  ENSMUSG00000119948 (Evidence)
• NCBI Gene
  118567337

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000119948	Ensembl Gene Model | MGI Sequence Detail	103362	C57BL/6J
transcript	ENSMUST00000228080	Ensembl | MGI Sequence Detail	3741	Not Applicable

Molecular
Reagents

• All nucleic 1

  cDNA 1

Other
Accession IDs

MGI:5593917

References

• Summaries
  All 9

  Phenotypes 2
• Earliest
  J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
• Latest
  J:80000 The FANTOM Consortium and The RIKEN Genome Exploration Research Group Phase I & II Team, Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Nature. 2002;420:563-573

TSS for 1700087I21Rik:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr127062	Chr14:103584010-103584032 (+)	18 bp
Tssr127063	Chr14:103584310-103584382 (+)	343 bp
Tssr127064	Chr14:103584499-103584517 (+)	505 bp
Tssr127065	Chr14:103676113-103676119 (+)	92,113 bp