1700084C06Rik Gene Detail

Summary

• Symbol
  1700084C06Rik
• Name
  RIKEN cDNA 1700084C06 gene

• Feature Type
  lncRNA gene
• IDs
  MGI:1923868
  NCBI Gene: 76618
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr9:21003024-21039691 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 9, 7.71 cM, cytoband A3
• Mapping Data
  2 experiments

Strain
Comparison

• SNPs within 2kb
  1027 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1923868	lncRNA gene	Chr9:21003024-21039691 (+)
129S1/SvImJ	ENSMUSG00200049551	lncRNA gene	Chr9:17956952-17993399 (+)
A/J	ENSMUSG00195040500	lncRNA gene	Chr9:17793608-17830268 (+)
AKR/J	ENSMUSG00220037255	lncRNA gene	Chr9:17796067-17832728 (+)
BALB/cJ	ENSMUSG00180043746	lncRNA gene	Chr9:17927896-17964543 (+)
C3H/HeJ	ENSMUSG00175045171	lncRNA gene	Chr9:17890262-17926911 (+)
C57BL/6NJ	ENSMUSG00215038770	lncRNA gene	Chr9:17887776-17924420 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0004173	antisense lncRNA gene	Chr9:17093210-17138530 (+)
CAST/EiJ	ENSTCUG00005034118	lncRNA gene	Chr9:17920738-17956835 (+)
CBA/J	ENSMUSG00210046513	lncRNA gene	Chr9:17871321-17907759 (+)
DBA/2J	ENSMUSG00185026756	lncRNA gene	Chr9:17986744-18023390 (+)
FVB/NJ	ENSMUSG00205045290	lncRNA gene	Chr9:18219745-18256283 (+)
JF1/MsJ	ENSUMUG00000047216	lncRNA gene	Chr9:18096383-18132685 (+)
LP/J	ENSMUSG00230044738	lncRNA gene	Chr9:18378132-18414763 (+)
NOD/ShiLtJ	ENSMUSG00190045550	lncRNA gene	Chr9:17911781-17948220 (+)
NZO/HlLtJ	ENSMUSG00225051375	lncRNA gene	Chr9:18328673-18365180 (+)
PWK/PhJ	ENSLUMG00010046777	lncRNA gene	Chr9:17986318-18022576 (+)
SPRET/EiJ	ENSMSPG00010025943	lncRNA gene	Chr9:18213925-18250253 (+)
WSB/EiJ	ENSIUOG00005045495	lncRNA gene	Chr9:17457770-17494187 (+)

Homology

• Gene Tree
  1700084C06Rik
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  4 phenotype references
  

• All Mutations and Alleles
  48
• Gene trapped
  48
• Find Mice (IMSR)
  30 strains or lines available

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  597
• cDNA Data
  1

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  27
• UniProt
  1

• Ensembl
  ENSMUSG00000086016 (Evidence)
• NCBI Gene
  76618

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000086016	Ensembl Gene Model | MGI Sequence Detail	36668	C57BL/6J
transcript	ENSMUST00000280137	Ensembl | MGI Sequence Detail	1232	Not Applicable
polypeptide	Q9CVQ5	UniProt | EBI | MGI Sequence Detail	106	Not Applicable

Protein
Information

• UniProt
  1 Sequence

Molecular
Reagents

• All nucleic 1

  cDNA 1

  
  

  Microarray probesets 3

References

• Summaries
  All 15

  Phenotypes 4
• Earliest
  J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
• Latest
  J:142754 Hansen GM, et al., Large-scale gene trapping in C57BL/6N mouse embryonic stem cells. Genome Res. 2008 Oct;18(10):1670-9

TSS for 1700084C06Rik:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr83965	Chr9:21003024-21003063 (+)	20 bp