2010001A14Rik Gene Detail

Summary

• Symbol
  2010001A14Rik
• Name
  RIKEN cDNA 2010001A14 gene

• Feature Type
  lncRNA gene
• IDs
  MGI:1923766
  NCBI Gene: 76516
• Alliance
  gene page
• Transcription Start Sites
  3 TSS

Location &
Maps

• Sequence Map
  Chr11:57686325-57692293 bp, - strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 11, 35.27 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  99 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1923766	lncRNA gene	Chr11:57686321-57692313 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0015171	unclassified non-coding RNA gene	Chr11:57429806-57439739 (-)
A/J	MGP_AJ_G0015145	unclassified non-coding RNA gene	Chr11:55263310-55270074 (-)
AKR/J	MGP_AKRJ_G0015108	unclassified non-coding RNA gene	Chr11:57080395-57086166 (-)
BALB/cJ	MGP_BALBcJ_G0015107	unclassified non-coding RNA gene	Chr11:55603619-55608856 (-)
C3H/HeJ	MGP_C3HHeJ_G0014931	unclassified non-coding RNA gene	Chr11:57007284-57016855 (-)
C57BL/6NJ	MGP_C57BL6NJ_G0015564	unclassified non-coding RNA gene	Chr11:59187290-59194712 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0013308	unclassified non-coding RNA gene	Chr11:52624208-52629976 (-)
CAST/EiJ	MGP_CASTEiJ_G0014484	unclassified non-coding RNA gene	Chr11:57078032-57086193 (-)
CBA/J	MGP_CBAJ_G0014910	unclassified non-coding RNA gene	Chr11:61915756-61931473 (-)
DBA/2J	MGP_DBA2J_G0015003	unclassified non-coding RNA gene	Chr11:54909209-54915949 (-)
FVB/NJ	MGP_FVBNJ_G0015015	unclassified non-coding RNA gene	Chr11:54606728-54612512 (-)
LP/J	MGP_LPJ_G0015084	unclassified non-coding RNA gene	Chr11:57937331-57948066 (-)
NOD/ShiLtJ	MGP_NODShiLtJ_G0015041	unclassified non-coding RNA gene	Chr11:63052446-63060820 (-)
NZO/HlLtJ	MGP_NZOHlLtJ_G0015603	unclassified non-coding RNA gene	Chr11:57104397-57115368 (-)
PWK/PhJ	MGP_PWKPhJ_G0014276	unclassified non-coding RNA gene	Chr11:55510643-55517134 (-)
SPRET/EiJ	MGP_SPRETEiJ_G0014063	unclassified non-coding RNA gene	Chr11:56981101-56989155 (-)
WSB/EiJ	MGP_WSBEiJ_G0014587	unclassified non-coding RNA gene	Chr11:56755924-56762348 (-)

Homology

• Gene Tree
  2010001A14Rik
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  6 phenotype references
  

• All Mutations and Alleles
  15
• Chemically induced (other)
  1
• Gene trapped
  14
• Genomic Mutations
  1 involving 2010001A14Rik
• Find Mice (IMSR)
  0 strains or lines available

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  715
• Tissues
  8
• cDNA Data
  10
• Literature Summary
  1

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  28
• RefSeq
  1

• Ensembl
  ENSMUSG00000087165 (Evidence)
• NCBI Gene
  76516

Representative Sequences			Length	Strain/Species
genomic	76516	NCBI Gene Model | MGI Sequence Detail	5969	C57BL/6J
transcript	NR_131042	RefSeq | MGI Sequence Detail	764	C57BL/6

Molecular
Reagents

• All nucleic 11

  cDNA 10

  Primer pair 1

  
  

  Microarray probesets 1

References

• Summaries
  All 17

  Developmental Gene Expression 1

  Phenotypes 6
• Earliest
  J:137335 Roderick TH, Chromosomal inversions in studies of mammalian mutagenesis. Genetics. 1979 May;92(1 Pt 1 Suppl):s121-6
• Latest
  J:263878 Aboudehen K, et al., Long noncoding RNA Hoxb3os is dysregulated in autosomal dominant polycystic kidney disease and regulates mTOR signaling. J Biol Chem. 2018 Jun 15;293(24):9388-9398

TSS for 2010001A14Rik:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr108122	Chr11:57692285-57692313 (-)	-6 bp
Tssr108121	Chr11:57692262-57692279 (-)	22 bp
Tssr108120	Chr11:57692237-57692258 (-)	45 bp