2010004M13Rik Gene Detail

Summary

• Symbol
  2010004M13Rik
• Name
  RIKEN cDNA 2010004M13 gene

• Feature Type
  lncRNA gene
• IDs
  MGI:1923761
  NCBI Gene: 76511
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr7:15782244-15783007 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 7, Syntenic
• Mapping Data
  2 experiments

Strain
Comparison

• SNPs within 2kb
  56 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1923761	lncRNA gene	Chr7:15782244-15783007 (+)
129S1/SvImJ	ENSMUSG00200042007	lncRNA gene	Chr7:9156965-9157681 (+)
A/J	ENSMUSG00195052579	lncRNA gene	Chr7:9618397-9619113 (+)
AKR/J	ENSMUSG00220030147	lncRNA gene	Chr7:7910584-7911300 (+)
BALB/cJ	ENSMUSG00180051098	lncRNA gene	Chr7:9534187-9534903 (+)
C3H/HeJ	ENSMUSG00175052550	lncRNA gene	Chr7:10021648-10022364 (+)
C57BL/6NJ	ENSMUSG00215044675	lncRNA gene	Chr7:9280947-9281663 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005052575	lncRNA gene	Chr7:10026357-10027073 (+)
CBA/J	ENSMUSG00210049529	lncRNA gene	Chr7:9249030-9249746 (+)
DBA/2J	ENSMUSG00185055514	lncRNA gene	Chr7:12763505-12764221 (+)
FVB/NJ	ENSMUSG00205048968	lncRNA gene	Chr7:9655354-9656070 (+)
JF1/MsJ	ENSUMUG00000044560	lncRNA gene	Chr7:16033997-16034713 (+)
LP/J	ENSMUSG00230047373	lncRNA gene	Chr7:16981395-16982111 (+)
NOD/ShiLtJ	ENSMUSG00190051544	lncRNA gene	Chr7:6082935-6083651 (+)
NZO/HlLtJ	ENSMUSG00225054588	lncRNA gene	Chr7:14215845-14216561 (+)
PWK/PhJ	ENSLUMG00010051366	lncRNA gene	Chr7:12340329-12341045 (+)
SPRET/EiJ	ENSMSPG00010048692	lncRNA gene	Chr7:8799743-8800459 (+)
WSB/EiJ	ENSIUOG00005053716	lncRNA gene	Chr7:16455714-16456430 (-)
WSB/EiJ	ENSIUOG00005000162	lncRNA gene	Chr5:60886164-60886838 (-)

Homology

• Gene Tree
  2010004M13Rik
  

Expression

• cDNA Data
  16

• Other Mouse Links
  GEO

Sequences &
Gene Models

• All Sequences
  26
• RefSeq
  1

• Ensembl
  ENSMUSG00000120250 (Evidence)
• NCBI Gene
  76511

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000120250	Ensembl Gene Model | MGI Sequence Detail	764	C57BL/6J
transcript	ENSMUST00000242097	Ensembl | MGI Sequence Detail	764	Not Applicable

Molecular
Reagents

• All nucleic 16

  cDNA 16

  
  

  Microarray probesets 2

Other
Accession IDs

MGI:2142065

References

• Summaries
  All 10
• Earliest
  J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
• Latest
  J:80000 The FANTOM Consortium and The RIKEN Genome Exploration Research Group Phase I & II Team, Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Nature. 2002;420:563-573

TSS for 2010004M13Rik:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr64569	Chr7:15782305-15782372 (+)	95 bp