Slamf9 MGI Mouse Gene Detail - MGI:1923692

Symbol

Slamf9
Name

SLAM family member 9
Synonyms

2310026I04Rik, Cd2f10, CD2F-10, CD84-H1, SF2001

Feature Type

protein coding gene
IDs

MGI:1923692
NCBI Gene: 98365
Alliance

genome feature page
Transcription Start Sites

3 TSS

Sequence Map

Chr1:172302927-172305976 bp, + strand
From NCBI annotation of GRCm39
View this region in JBrowse
Genome Browsers

Ensembl | UCSC | NCBI

Genetic Map

Chromosome 1, 79.85 cM
Mapping Data

3 experiments

SNPs within 2kb

172 from dbSNP Build 142
Strain Annotations

19

For selected strains:

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1923692	protein coding gene	Chr1:172302925-172306142 (+)
129S1/SvImJ	ENSMUSG00200043693	protein coding gene	Chr1:170240593-170243808 (+)
A/J	ENSMUSG00195045324	protein coding gene	Chr1:169542504-169545719 (+)
AKR/J	ENSMUSG00220028636	protein coding gene	Chr1:169273266-169276481 (+)
BALB/cJ	ENSMUSG00180040447	protein coding gene	Chr1:169869252-169872467 (+)
C3H/HeJ	ENSMUSG00175043448	protein coding gene	Chr1:169880215-169883430 (+)
C57BL/6NJ	ENSMUSG00215043198	protein coding gene	Chr1:169260705-169263922 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0014896	protein coding gene	Chr1:162746366-162749575 (+)
CAST/EiJ	ENSTCUG00005042858	protein coding gene	Chr1:167832130-167835350 (+)
CBA/J	ENSMUSG00210036830	protein coding gene	Chr1:169746691-169749906 (+)
DBA/2J	ENSMUSG00185027758	protein coding gene	Chr1:174048800-174052015 (+)
FVB/NJ	ENSMUSG00205038433	protein coding gene	Chr1:168728814-168732034 (+)
JF1/MsJ	ENSUMUG00000015991	protein coding gene	Chr1:172976995-172980215 (+)
LP/J	ENSMUSG00230026243	protein coding gene	Chr1:173645422-173648637 (+)
NOD/ShiLtJ	ENSMUSG00190038483	protein coding gene	Chr1:169555680-169558895 (+)
NZO/HlLtJ	ENSMUSG00225004384	protein coding gene	Chr1:177226293-177229513 (+)
PWK/PhJ	ENSLUMG00010030129	protein coding gene	Chr1:168509512-168512732 (+)
SPRET/EiJ	ENSMSPG00010048151	protein coding gene	Chr1:171862637-171865851 (+)
WSB/EiJ	ENSIUOG00005032988	protein coding gene	Chr1:168892781-168895996 (+)

Human Ortholog

SLAMF9, SLAM family member 9

Vertebrate Orthologs

2

Vertebrate Orthology Source

Alliance of Genome Resources

Human Ortholog

SLAMF9, SLAM family member 9
Synonyms

CD2F-10, CD2F10, CD84-H1, CD84H1, SF2001
Links

HGNC:18430

NCBI Gene ID: 89886

UniProt: Q96A28
Chr Location

1q23.2; chr1:159951492-159983984 (-) GRCh38

MGI Vertebrate Homology

Slamf9 stringent orthology
1 human;1 mouse;1 rat
HCOP

vertebrate homology predictions: SLAMF9
Gene Tree

Slamf9

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Phenotype Summary

3 phenotypes from 1 allele in 1 genetic background
18 phenotype references

Phenotype Overview

Blue squares indicate phenotypes directly attributed to mutations/alleles of this gene.

adipose tissue	behavior/neurological	cardiovascular system	cellular	craniofacial	digestive/alimentary system	embryo	endocrine/exocrine glands	growth/size/body	hearing/vestibular/ear	hematopoietic system	homeostasis/metabolism	integument	immune system	limbs/digits/tail	liver/biliary system	mortality/aging	muscle	nervous system	pigmentation	renal/urinary system	reproductive system	respiratory system	skeleton	taste/olfaction	neoplasm	vision/eye

Click cells to view annotations.

All Mutations and Alleles

13
Chemically induced (other)

2
Endonuclease-mediated

6
Gene trapped

1
Targeted

4
Genomic Mutations

2 involving Slamf9
Incidental Mutations

Mutagenetix , APF
Find Mice (IMSR)

23 strains or lines available

Mice homozygous for a null allele exhibit increased plasmacytoid dendrtic cell numbrs in the lymph nodes and delayed onset of experimental autoimmune encephalomyelitis with milder disease.

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All GO Annotations

12
GO References

5

Molecular Function

carbohydrate derivative binding	cytoskeletal protein binding	DNA binding	enzyme regulator	hydrolase	ligase	lipid binding	oxidoreductase	RNA binding	signaling receptor activity	signaling receptor binding	transcription	transferase	transporter

Biological Process

carbohydrate derivative metabolism	cell differentiation	cell population proliferation	cellular component organization	DNA-templated transcription	establishment of localization	homeostatic process	immune system process	lipid metabolic process	programmed cell death	protein metabolic process	response to stimulus	signaling	system development

Cellular Component

cell projection	cytoplasmic vesicle	cytoskeleton	cytosol	endoplasmic reticulum	endosome	extracellular region	Golgi apparatus	mitochondrion	membraneless organelle	nucleus	organelle envelope	organelle lumen	plasma membrane	protein-containing complex	synapse	vacuole

Click cells to view annotations.

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Expression Overview

GXD's primary emphasis is on endogenous gene expression during development. Click on grid cells to view annotations.

Blue cells = expressed in wild-type.
Gray triangles = other expression annotations only
(e.g. absence of expression or data from mutants).

early conceptus	embryo ectoderm	embryo endoderm	embryo mesoderm	embryo mesenchyme	extraembryonic component	alimentary system	auditory system	branchial arches	cardiovascular system	connective tissue	endocrine system	exocrine system	hemolymphoid system	integumental system	limbs	liver and biliary system	musculoskeletal system	nervous system	olfactory system	reproductive system	respiratory system	urinary system	visual system

Click cells to view annotations.

Assay Results

601
Tissues

4
cDNA Data

13
Literature Summary

2

Images

Tissue x Stage Matrix

Other Mouse Links

Allen Institute

GEO

Expression Atlas

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All Sequences

42
RefSeq

2
UniProt

4
CCDS

CCDS15514.1

Ensembl

ENSMUSG00000026548 (Evidence)
NCBI Gene

98365

			Length	Strain/Species	Flank
genomic	98365	NCBI Gene Model \| MGI Sequence Detail	3050	C57BL/6J	± kb
transcript	NM_029612	RefSeq \| MGI Sequence Detail	1152	C57BL/6
polypeptide	Q9D780	UniProt \| EBI \| MGI Sequence Detail	285	Not Applicable

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UniProt

4 Sequences
Protein Ontology

PR:000014915 SLAM family member 9

(term hierarchy)
InterPro Domains

IPR015631 CD2/SLAM family receptor

IPR003599 Immunoglobulin domain subtype

IPR007110 Immunoglobulin-like domain

IPR036179 Immunoglobulin-like domain superfamily

IPR013783 Immunoglobulin-like fold

IPR013106 Immunoglobulin V-set domain
GlyGen

Q9D780 7 sites

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All nucleic 14

cDNA 13

Other 1

Microarray probesets 4

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MGI:2138260

Summaries

All 49

Developmental Gene Expression 2

Gene Ontology 5

Phenotypes 18
Earliest

J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
Latest

J:345621 Adams DJ, et al., Genetic determinants of micronucleus formation in vivo. Nature. 2024 Mar;627(8002):130-136

TSS for Slamf9:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr10198	Chr1:172302938-172302951 (+)	18 bp
Tssr10199	Chr1:172302954-172302979 (+)	40 bp
Tssr10200	Chr1:172302994-172303001 (+)	71 bp

Contributing Projects: Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources Funding Information Warranty Disclaimer, Privacy Notice, Licensing, & Copyright Send questions and comments to User Support.	last database update 09/08/2026 MGI 6.24