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Smkr1-ps Pseudogene Detail
Summary
  • Symbol
    Smkr1-ps
  • Name
    small lysine rich protein 1, pseudogene
  • Synonyms
    1700023L04Rik, Smkr-ps
Location &
Maps
more
  • Sequence Map
    Chr6:29993007-29993204 bp, + strand
    From Ensembl annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 6, 12.39 cM
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    126 from dbSNP Build 142
  • Strain Annotations
    19
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1923669
 pseudogene Chr6:29985328-29993530 (+)
129S1/SvImJ ENSMUSG00200035974
 pseudogene Chr6:27039517-27048148 (+)
A/J ENSMUSG00195009325
 pseudogene Chr6:27002075-27010705 (+)
AKR/J ENSMUSG00220004404
 pseudogene Chr6:26595174-26603804 (+)
BALB/cJ ENSMUSG00180022570
 pseudogene Chr6:27133736-27142367 (+)
C3H/HeJ ENSMUSG00175020599
 pseudogene Chr6:26996971-27005599 (+)
C57BL/6NJ ENSMUSG00215025706
 pseudogene Chr6:27037210-27045818 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0006297
 lincRNA gene Chr6:24842932-24850865 (+)
CAST/EiJ ENSTCUG00005028765
 pseudogene Chr6:26585238-26593570 (+)
CBA/J ENSMUSG00210004561
 pseudogene Chr6:27018203-27026833 (+)
DBA/2J ENSMUSG00185022085
 pseudogene Chr6:27112722-27121351 (+)
FVB/NJ ENSMUSG00205032068
 pseudogene Chr6:27087150-27095781 (+)
JF1/MsJ ENSUMUG00000035244
 pseudogene Chr6:26809722-26818071 (+)
LP/J ENSMUSG00230030497
 pseudogene Chr6:28056113-28064743 (+)
NOD/ShiLtJ ENSMUSG00190031999
 pseudogene Chr6:26881755-26890385 (+)
NZO/HlLtJ ENSMUSG00225014630
 pseudogene Chr6:30017098-30025728 (+)
PWK/PhJ ENSLUMG00010024433
 pseudogene Chr6:26587613-26595993 (+)
SPRET/EiJ ENSMSPG00010021703
 pseudogene Chr6:27012980-27019974 (+)
WSB/EiJ ENSIUOG00005035645
 pseudogene Chr6:27189488-27197856 (+)



Homology
less
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    597
  • cDNA Data
    15
Sequences &
Gene Models
less
  • All Sequences
    31
  • RefSeq
    2
  • UniProt
    1
Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000045709 Ensembl Gene Model | MGI Sequence Detail 198 C57BL/6J ±  kb
transcript ENSMUST00000141679 Ensembl | MGI Sequence Detail 198 Not Applicable  
polypeptide Q8CF37 UniProt | EBI | MGI Sequence Detail 103 Not Applicable  
For the selected sequence
Protein
Information
less
  • UniProt
    1 Sequence
  • InterPro Domains
    IPR037760 Small lysine-rich protein 1
Molecular
Reagents
less
  • All nucleic 17
    Genomic 2
    cDNA 15

    Microarray probesets 2
Other
Accession IDs
less
MGI:8325186
References
more
  • Summaries
    All 14
  • Earliest
    J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
  • Latest
    J:153498 Diez-Roux G, et al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo. PLoS Biol. 2011;9(1):e1000582
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
09/15/2026
MGI 6.29 		The Jackson Laboratory