Ankrd48 Gene Detail

Summary

• Symbol
  Ankrd48
• Name
  ankyrin repeat domain 48
• Synonyms
  1700008J08Rik, 1700012M14Rik, Ankrd36, GC3

• Feature Type
  protein coding gene
• IDs
  MGI:1923639
  NCBI Gene: 76389
• Alliance
  gene page
• Transcription Start Sites
  6 TSS

Location &
Maps

• Sequence Map
  Chr11:5519684-5639337 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 11, 3.71 cM, cytoband A1
• Mapping Data
  2 experiments

Strain
Comparison

• SNPs within 2kb
  678 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1923639	protein coding gene	Chr11:5519680-5639617 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0018003	protein coding gene	Chr11:2633208-2763196 (+)
A/J	MGP_AJ_G0017976	protein coding gene	Chr11:2534313-2658877 (+)
AKR/J	MGP_AKRJ_G0017940	protein coding gene	Chr11:2671733-2802333 (+)
BALB/cJ	MGP_BALBcJ_G0017944	protein coding gene	Chr11:2523750-2649547 (+)
C3H/HeJ	MGP_C3HHeJ_G0017757	protein coding gene	Chr11:2542462-2666278 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0018396	protein coding gene	Chr11:2701036-2832948 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0016054	protein coding gene	Chr11:2423688-2546908 (+)
CAST/EiJ	MGP_CASTEiJ_G0017319	protein coding gene	Chr11:2507767-2629480 (+)
CBA/J	MGP_CBAJ_G0017732	protein coding gene	Chr11:3033159-3174364 (+)
DBA/2J	MGP_DBA2J_G0017842	protein coding gene	Chr11:2433089-2554711 (+)
FVB/NJ	MGP_FVBNJ_G0017834	protein coding gene	Chr11:2472611-2592219 (+)
LP/J	MGP_LPJ_G0017913	protein coding gene	Chr11:2704364-2846688 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0017860	protein coding gene	Chr11:2661875-2803876 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0018436	protein coding gene	Chr11:2667931-2801167 (+)
PWK/PhJ	MGP_PWKPhJ_G0017099	protein coding gene	Chr11:2461432-2588521 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0016896	protein coding gene	Chr11:2640194-2762973 (+)
WSB/EiJ	MGP_WSBEiJ_G0017373	protein coding gene	Chr11:2517001-2648403 (+)

Homology

• MGI Vertebrate Homology
  Ankrd48 stringent orthology
  1 mouse;1 rat
  
• Gene Tree
  Ankrd48
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  7 phenotype references
  

• All Mutations and Alleles
  9
• Endonuclease-mediated
  3
• Gene trapped
  4
• Targeted
  2
• Incidental Mutations
  Mutagenetix , APF
• Find Mice (IMSR)
  58 strains or lines available

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  706
• cDNA Data
  15

Tissue x Stage Matrix

• Other Mouse Links
  Allen Institute
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  67
• RefSeq
  25
• UniProt
  5
• CCDS
  CCDS36103.1

• Ensembl
  ENSMUSG00000020481 (Evidence)
• NCBI Gene
  76389

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000020481	Ensembl Gene Model | MGI Sequence Detail	119654	C57BL/6J
transcript	ENSMUST00000109856	Ensembl | MGI Sequence Detail	4491	Not Applicable
polypeptide	ENSMUSP00000105482	Ensembl | MGI Sequence Detail	1415	Not Applicable

Protein
Information

• UniProt
  5 Sequences
• InterPro Domains
  IPR002110 Ankyrin repeat
  IPR036770 Ankyrin repeat-containing domain superfamily

Molecular
Reagents

• All nucleic 16

  Genomic 1

  cDNA 15

  
  

  Microarray probesets 5

Other
Accession IDs

MGI:1919092

References

• Summaries
  All 29

  Phenotypes 7
• Earliest
  J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
• Latest
  J:326541 Cyagen Biosciences Inc., Cyagen Biosciences Website. 2022;

TSS for Ankrd48:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr100189	Chr11:5519679-5519690 (+)	1 bp
Tssr100190	Chr11:5524107-5524115 (+)	4,427 bp
Tssr100191	Chr11:5524156-5524167 (+)	4,478 bp
Tssr100192	Chr11:5545435-5545438 (+)	25,753 bp
Tssr100193	Chr11:5578740-5578754 (+)	59,063 bp
Tssr100194	Chr11:5578756-5578767 (+)	59,078 bp