Reno1 MGI Mouse Gene Detail - MGI:1923627 - regulator of early neurogenesis 1

Symbol

Reno1
Name

regulator of early neurogenesis 1
Synonyms

2810410L24Rik

Feature Type

lncRNA gene
IDs

MGI:1923627
NCBI Gene: 100042332
Alliance

genome feature page
Transcription Start Sites

1 TSS

Sequence Map

Chr11:120077476-120080682 bp, - strand
From NCBI annotation of GRCm39
View this region in JBrowse
Genome Browsers

Ensembl | UCSC | NCBI

Genetic Map

Chromosome 11, 83.96 cM
Mapping Data

2 experiments

SNPs within 2kb

104 from dbSNP Build 142
Strain Annotations

19

For selected strains:

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1923627	lncRNA gene	Chr11:120076225-120080857 (-)
129S1/SvImJ	ENSMUSG00200052788	lncRNA gene	Chr11:117439156-117443745 (-)
A/J	ENSMUSG00195032179	lncRNA gene	Chr11:117114177-117118766 (-)
AKR/J	ENSMUSG00220031551	lncRNA gene	Chr11:117264576-117269164 (-)
BALB/cJ	ENSMUSG00180052283	lncRNA gene	Chr11:117406890-117411482 (-)
C3H/HeJ	ENSMUSG00175048012	lncRNA gene	Chr11:117364793-117369382 (-)
C57BL/6NJ	ENSMUSG00215047141	lncRNA gene	Chr11:116934717-116939305 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0013360	unclassified non-coding RNA gene	Chr11:116094116-116098605 (-)
CAST/EiJ	ENSTCUG00005036892	lncRNA gene	Chr11:116793533-116798102 (-)
CBA/J	ENSMUSG00210050635	lncRNA gene	Chr11:117078814-117083403 (-)
DBA/2J	ENSMUSG00185027020	lncRNA gene	Chr11:117391971-117396560 (-)
FVB/NJ	ENSMUSG00205046589	lncRNA gene	Chr11:117239681-117244273 (-)
JF1/MsJ	ENSUMUG00000053350	lncRNA gene	Chr11:117691563-117696147 (-)
LP/J	ENSMUSG00230051236	lncRNA gene	Chr11:118457768-118462357 (-)
NOD/ShiLtJ	ENSMUSG00190050431	lncRNA gene	Chr11:117463131-117467719 (-)
NZO/HlLtJ	ENSMUSG00225054083	lncRNA gene	Chr11:120606763-120611351 (-)
PWK/PhJ	ENSLUMG00010024236	lncRNA gene	Chr11:117208893-117213475 (-)
SPRET/EiJ	ENSMSPG00010043259	lncRNA gene	Chr11:117785533-117790090 (-)
WSB/EiJ	ENSIUOG00005049330	lncRNA gene	Chr11:117205283-117209874 (-)

Human Ortholog

RENO1, regulator of early neurogenesis 1

Vertebrate Orthologs

1

Vertebrate Orthology Source

Alliance of Genome Resources

Human Ortholog

RENO1, regulator of early neurogenesis 1
Links

HGNC:54096

NCBI Gene ID: 119545628
Chr Location

17q25.3; chr17:81339178-81345995 (-) GRCh38

MGI Vertebrate Homology

Reno1 stringent orthology
1 human;1 mouse
HCOP

vertebrate homology predictions: RENO1
Gene Tree

Reno1

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Phenotype Summary

3 phenotype references

All Mutations and Alleles

15
Gene trapped

15
Find Mice (IMSR)

18 strains or lines available

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All GO Annotations

6
GO References

1

Molecular Function

carbohydrate derivative binding	cytoskeletal protein binding	DNA binding	enzyme regulator	hydrolase	ligase	lipid binding	oxidoreductase	RNA binding	signaling receptor activity	signaling receptor binding	transcription	transferase	transporter

Biological Process

carbohydrate derivative metabolism	cell differentiation	cell population proliferation	cellular component organization	DNA-templated transcription	establishment of localization	homeostatic process	immune system process	lipid metabolic process	programmed cell death	protein metabolic process	response to stimulus	signaling	system development

Cellular Component

cell projection	cytoplasmic vesicle	cytoskeleton	cytosol	endoplasmic reticulum	endosome	extracellular region	Golgi apparatus	mitochondrion	membraneless organelle	nucleus	organelle envelope	organelle lumen	plasma membrane	protein-containing complex	synapse	vacuole

Click cells to view annotations.

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Expression Overview

GXD's primary emphasis is on endogenous gene expression during development. Click on grid cells to view annotations.

Blue cells = expressed in wild-type.
Gray triangles = other expression annotations only
(e.g. absence of expression or data from mutants).

early conceptus	embryo ectoderm	embryo endoderm	embryo mesoderm	embryo mesenchyme	extraembryonic component	alimentary system	auditory system	branchial arches	cardiovascular system	connective tissue	endocrine system	exocrine system	hemolymphoid system	integumental system	limbs	liver and biliary system	musculoskeletal system	nervous system	olfactory system	reproductive system	respiratory system	urinary system	visual system

Click cells to view annotations.

Assay Results

601
Tissues

4
cDNA Data

19
Literature Summary

2

Images

Tissue x Stage Matrix

Other Mouse Links

GEO

Expression Atlas

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All Sequences

63
RefSeq

1
UniProt

1

Ensembl

ENSMUSG00000075389 (Evidence)
NCBI Gene

100042332

			Length	Strain/Species	Flank
genomic	100042332	NCBI Gene Model \| MGI Sequence Detail	3207	C57BL/6J	± kb
transcript	NR_030682	RefSeq \| MGI Sequence Detail	1707	C57BL/6
polypeptide	Q3TRT8	UniProt \| EBI \| MGI Sequence Detail	120	Not Applicable

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UniProt

1 Sequence

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All nucleic 21

cDNA 20

Primer pair 1

Microarray probesets 1

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MGI:7280911

Summaries

All 20

Developmental Gene Expression 2

Gene Ontology 1

Phenotypes 3
Earliest

J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
Latest

J:301382 Hezroni H, et al., Regulation of neuronal commitment in mouse embryonic stem cells by the Reno1/Bahcc1 locus. EMBO Rep. 2020 Nov 5;21(11):e51264

TSS for Reno1:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr112275	Chr11:120080689-120080765 (-)	-45 bp

Contributing Projects: Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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