1110019D14Rik Gene Detail

Summary

• Symbol
  1110019D14Rik
• Name
  RIKEN cDNA 1110019D14 gene

• Feature Type
  lncRNA gene
• IDs
  MGI:1923561
  NCBI Gene: 76311
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr6:13871568-13896420 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 6, 5.80 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  881 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1923561	lncRNA gene	Chr6:13835858-14044405 (+)
129S1/SvImJ	ENSMUSG00200020156	lncRNA gene	Chr6:10918839-11091768 (+)
A/J	ENSMUSG00195013463	lncRNA gene	Chr6:10859318-11032265 (+)
AKR/J	ENSMUSG00220001081	lncRNA gene	Chr6:10413625-10588663 (+)
BALB/cJ	ENSMUSG00180001325	lncRNA gene	Chr6:10980664-11158283 (+)
C3H/HeJ	ENSMUSG00175016749	lncRNA gene	Chr6:10752054-10929604 (+)
C57BL/6NJ	ENSMUSG00215013422	lncRNA gene	Chr6:10924586-11097501 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0006287	lincRNA gene	Chr6:9715361-9890671 (+)
CAST/EiJ	ENSTCUG00005022515	lncRNA gene	Chr6:10638881-10838273 (+)
CBA/J	ENSMUSG00210006845	lncRNA gene	Chr6:10787908-10965489 (+)
DBA/2J	ENSMUSG00185026256	lncRNA gene	Chr6:10945122-11118071 (+)
FVB/NJ	ENSMUSG00205008297	lncRNA gene	Chr6:10870503-11045531 (+)
JF1/MsJ	ENSUMUG00000001711	lncRNA gene	Chr6:10759701-10934475 (+)
LP/J	ENSMUSG00230003363	lncRNA gene	Chr6:11948350-12121271 (+)
NOD/ShiLtJ	ENSMUSG00190010417	lncRNA gene	Chr6:10694662-10867581 (+)
NZO/HlLtJ	ENSMUSG00225006257	lncRNA gene	Chr6:13824026-13999031 (+)
PWK/PhJ	ENSLUMG00010020355	lncRNA gene	Chr6:10515200-10694151 (+)
SPRET/EiJ	ENSMSPG00010015043	lncRNA gene	Chr6:10668651-10874566 (+)
WSB/EiJ	ENSIUOG00005003623	lncRNA gene	Chr6:10912901-11092921 (+)

Homology

• Gene Tree
  1110019D14Rik
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  2
• Gene trapped
  2
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597
• cDNA Data
  4

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  57
• RefSeq
  1

• Ensembl
  ENSMUSG00000097616 (Evidence)
• NCBI Gene
  76311

Representative Sequences			Length	Strain/Species
genomic	76311	NCBI Gene Model | MGI Sequence Detail	24853	C57BL/6J
transcript	NR_045995	RefSeq | MGI Sequence Detail	1498	C57BL/6

Molecular
Reagents

• All nucleic 4

  cDNA 4

  
  

  Microarray probesets 2

References

• Summaries
  All 14

  Phenotypes 2
• Earliest
  J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
• Latest
  J:142754 Hansen GM, et al., Large-scale gene trapping in C57BL/6N mouse embryonic stem cells. Genome Res. 2008 Oct;18(10):1670-9

TSS for 1110019D14Rik:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr54958	Chr6:13871516-13871561 (+)	-29 bp