Nap1l5 MGI Mouse Gene Detail - MGI:1923555 - nucleosome assembly protein 1-like 5

Symbol

Nap1l5
Name

nucleosome assembly protein 1-like 5
Synonyms

1110020M21Rik

Feature Type

protein coding gene
IDs

MGI:1923555
NCBI Gene: 58243
Alliance

gene page
Transcription Start Sites

5 TSS

Sequence Map

Chr6:58882218-58884061 bp, - strand
From Ensembl annotation of GRCm39
View this region in JBrowse
Genome Browsers

Ensembl | UCSC | NCBI

Genetic Map

Chromosome 6, 27.90 cM, cytoband C1
Mapping Data

4 experiments

SNPs within 2kb

20 from dbSNP Build 142
Strain Annotations

18

For selected strains:

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1923555	protein coding gene	Chr6:58882218-58884111 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0030819	protein coding gene	Chr6:58535806-58537649 (-)
A/J	MGP_AJ_G0030786	protein coding gene	Chr6:56005362-56007205 (-)
AKR/J	MGP_AKRJ_G0030714	protein coding gene	Chr6:57847249-57849092 (-)
BALB/cJ	MGP_BALBcJ_G0030798	protein coding gene	Chr6:56296104-56297947 (-)
C3H/HeJ	MGP_C3HHeJ_G0030512	protein coding gene	Chr6:57825600-57827443 (-)
C57BL/6NJ	MGP_C57BL6NJ_G0031256	protein coding gene	Chr6:59823170-59825013 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0028448	protein coding gene	Chr6:53015691-53017532 (-)
CAST/EiJ	MGP_CASTEiJ_G0029910	protein coding gene	Chr6:57481580-57483425 (-)
CBA/J	MGP_CBAJ_G0030485	protein coding gene	Chr6:62325894-62327737 (-)
DBA/2J	MGP_DBA2J_G0030636	protein coding gene	Chr6:55712954-55714797 (-)
FVB/NJ	MGP_FVBNJ_G0030589	protein coding gene	Chr6:55256928-55258771 (-)
LP/J	MGP_LPJ_G0030721	protein coding gene	Chr6:58463825-58465668 (-)
NOD/ShiLtJ	MGP_NODShiLtJ_G0030624	protein coding gene	Chr6:64980298-64982141 (-)
NZO/HlLtJ	MGP_NZOHlLtJ_G0031282	protein coding gene	Chr6:57711493-57713336 (-)
PWK/PhJ	MGP_PWKPhJ_G0029625	protein coding gene	Chr6:55459285-55461127 (-)
SPRET/EiJ	MGP_SPRETEiJ_G0029452	protein coding gene	Chr6:56913538-56915381 (-)
WSB/EiJ	MGP_WSBEiJ_G0029991	protein coding gene	Chr6:57902102-57903945 (-)

Human Ortholog

NAP1L5, nucleosome assembly protein 1 like 5

Vertebrate Orthologs

2

Vertebrate Orthology Source

Alliance of Genome Resources

Human Ortholog

NAP1L5, nucleosome assembly protein 1 like 5
Synonyms

DRLM
Links

HGNC:19968

NCBI Gene ID: 266812

neXtProt AC: NX_Q96NT1

UniProt: Q96NT1
Chr Location

4q22.1; chr4:88695913-88697829 (-) GRCh38

Alliance of Genome Resources

Nap1l5 stringent orthology
1 human;1 mouse;1 rat
HCOP

vertebrate homology predictions: NAP1L5
Gene Tree

Nap1l5

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Phenotype Summary

1 phenotype from 1 allele in 1 genetic background
2 phenotype references

Phenotype Overview

Blue squares indicate phenotypes directly attributed to mutations/alleles of this gene.

adipose tissue	behavior/neurological	cardiovascular system	cellular	craniofacial	digestive/alimentary system	embryo	endocrine/exocrine glands	growth/size/body	hearing/vestibular/ear	hematopoietic system	homeostasis/metabolism	immune system	integument	limbs/digits/tail	liver/biliary system	mortality/aging	muscle	neoplasm	nervous system	pigmentation	renal/urinary system	reproductive system	respiratory system	skeleton	taste/olfaction	vision/eye

Click cells to view annotations.

All Mutations and Alleles

1
Endonuclease-mediated

1
Incidental Mutations

Mutagenetix , APF
Find Mice (IMSR)

5 strains or lines available
Comparison Matrix

Gene Expression + Phenotype

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All GO Annotations

3
GO References

2

Molecular Function

carbohydrate derivative binding	cytoskeletal protein binding	DNA binding	enzyme regulator	hydrolase	ligase	lipid binding	oxidoreductase	RNA binding	signaling receptor activity	signaling receptor binding	transcription	transferase	transporter

Biological Process

carbohydrate derivative metabolism	cell differentiation	cell population proliferation	cellular component organization	establishment of localization	homeostatic process	immune system process	lipid metabolic process	programmed cell death	protein metabolic process	response to stimulus	signaling	system development

Cellular Component

cell projection	cytoplasmic vesicle	cytoskeleton	cytosol	endoplasmic reticulum	endosome	extracellular region	Golgi apparatus	mitochondrion	non-membrane-bounded organelle	nucleus	organelle envelope	organelle lumen	plasma membrane	protein-containing complex	synapse	vacuole

Click cells to view annotations.

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Expression Overview

GXD's primary emphasis is on endogenous gene expression during development. Click on grid cells to view annotations.

Blue cells = expressed in wild-type.
Gray triangles = other expression annotations only
(e.g. absence of expression or data from mutants).

early conceptus	embryo ectoderm	embryo endoderm	embryo mesoderm	embryo mesenchyme	extraembryonic component	alimentary system	auditory system	branchial arches	cardiovascular system	connective tissue	endocrine system	exocrine system	hemolymphoid system	integumental system	limbs	liver and biliary system	musculoskeletal system	nervous system	olfactory system	reproductive system	respiratory system	urinary system	visual system

Click cells to view annotations.

Assay Results

817
Tissues

50
cDNA Data

36
Literature Summary

5

Images

Tissue x Stage Matrix

Comparison Matrix

Gene Expression + Phenotype

Other Mouse Links

Allen Institute

GEO

Expression Atlas

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Nap1l5 interacts with 220 markers (Mir1a-1, Mir1a-2, Mir1b, ...) View All

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All Sequences

35
RefSeq

2
UniProt

3
CCDS

CCDS20197.1

Ensembl

ENSMUSG00000055430 (Evidence)
NCBI Gene

58243

			Length	Strain/Species	Flank
genomic	ENSMUSG00000055430	Ensembl Gene Model \| MGI Sequence Detail	1844	C57BL/6J	± kb
transcript	ENSMUST00000059539	Ensembl \| MGI Sequence Detail	1844	Not Applicable
polypeptide	ENSMUSP00000062780	Ensembl \| MGI Sequence Detail	156	Not Applicable

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UniProt

3 Sequences
Protein Ontology

PR:000010979 nucleosome assembly protein 1-like 5

(term hierarchy)
InterPro Domains

IPR037231 NAP-like superfamily

IPR002164 Nucleosome assembly protein (NAP)

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All nucleic 37

cDNA 36

Primer pair 1

Microarray probesets 4

Summaries

All 29

Developmental Gene Expression 5

Gene Ontology 2

Phenotypes 2
Earliest

J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
Latest

J:313619 Bedogni F, et al., Cell-Type-Specific Gene Expression in Developing Mouse Neocortex: Intermediate Progenitors Implicated in Axon Development. Front Mol Neurosci. 2021;14:686034

TSS for Nap1l5:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr61176	Chr6:58884105-58884116 (-)	-50 bp
Tssr61175	Chr6:58884086-58884104 (-)	-34 bp
Tssr61174	Chr6:58884038-58884083 (-)	0 bp
Tssr61173	Chr6:58884010-58884027 (-)	42 bp
Tssr61172	Chr6:58883235-58883246 (-)	820 bp

Contributing Projects: Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources Funding Information Warranty Disclaimer, Privacy Notice, Licensing, & Copyright Send questions and comments to User Support.	last database update 09/12/2023 MGI 6.22