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Pgcka1 Gene Detail
Summary
  • Symbol
    Pgcka1
  • Name
    PDCD10 and GCKIII kinases associated 1
  • Synonyms
    0610040J01Rik
  • Feature Type
    protein coding gene
  • IDs
    MGI:1923511
    NCBI Gene: 76261
  • Alliance
  • Transcription Start Sites
    4 TSS
Location &
Maps
more
  • Sequence Map
    Chr5:63969833-64056968 bp, + strand
    From NCBI annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
  • Genetic Map
    Chromosome 5, 32.80 cM
  • Mapping Data
    2 experiments
Strain
Comparison
more
  • SNPs within 2kb
    2404 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1923511
protein coding gene Chr5:63969706-64056968 (+)
129S1/SvImJ MGP_129S1SvImJ_G0029563
protein coding gene Chr5:63384044-63466460 (+)
A/J MGP_AJ_G0029531
protein coding gene Chr5:61019779-61101661 (+)
AKR/J MGP_AKRJ_G0029479
protein coding gene Chr5:62919237-63003501 (+)
BALB/cJ MGP_BALBcJ_G0029540
protein coding gene Chr5:61698058-61782415 (+)
C3H/HeJ MGP_C3HHeJ_G0029263
protein coding gene Chr5:63293263-63377401 (+)
C57BL/6NJ MGP_C57BL6NJ_G0029994
protein coding gene Chr5:66006726-66101624 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0027234
protein coding gene Chr5:57133971-57213727 (+)
CAST/EiJ MGP_CASTEiJ_G0028671
protein coding gene Chr5:62359191-62442798 (+)
CBA/J MGP_CBAJ_G0029232
protein coding gene Chr5:68105646-68200269 (+)
DBA/2J MGP_DBA2J_G0029378
protein coding gene Chr5:61046385-61128570 (+)
FVB/NJ MGP_FVBNJ_G0029338
protein coding gene Chr5:60234344-60314890 (+)
LP/J MGP_LPJ_G0029463
protein coding gene Chr5:63837669-63925462 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0029366
protein coding gene Chr5:71067970-71150950 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0030027
protein coding gene Chr5:62625938-62714542 (+)
PWK/PhJ MGP_PWKPhJ_G0028395
protein coding gene Chr5:60030070-60111930 (+)
SPRET/EiJ MGP_SPRETEiJ_G0028229
protein coding gene Chr5:61969524-62061307 (+)
WSB/EiJ MGP_WSBEiJ_G0028752
protein coding gene Chr5:62828398-62913121 (+)



Homology
more
  • Human Ortholog
    PGCKA1, PDCD10 and GCKIII kinases associated 1
  • Vertebrate Orthologs
    2
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    PGCKA1, PDCD10 and GCKIII kinases associated 1
  • Synonyms
    C4orf19
  • Links
    NCBI Gene ID: 55286
    neXtProt AC: NX_Q8IY42
    UniProt: Q8IY42

  • Chr Location
    4p14; chr4:37453255-37623495 (+)  GRCh38

Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    21 phenotype references
  • All Mutations and Alleles
    6
  • Chemically induced (other)
    2
  • Endonuclease-mediated
    1
  • Gene trapped
    1
  • Radiation induced
    1
  • Spontaneous
    1
  • Genomic Mutations
    4 involving Pgcka1
  • Incidental Mutations
  • Find Mice (IMSR)
Gene Ontology
(GO)
Classifications
less
Molecular Function

No experimental evidence to support Molecular Function annotation, following literature review. See J:73796.
Biological Process

No experimental evidence to support Biological Process annotation, following literature review. See J:73796.
Cellular Component

Expression
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Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
  • Tissues
  • cDNA Data
  • Literature Summary
Sequences &
Gene Models
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Representative SequencesLengthStrain/SpeciesFlank
genomic 76261 NCBI Gene Model | MGI Sequence Detail 87136 C57BL/6J ±  kb
transcript NM_001417897 RefSeq | MGI Sequence Detail 2144 C57BL/6  
polypeptide Q99K99 UniProt | EBI | MGI Sequence Detail 313 Not Applicable  
For the selected sequence
Protein
Information
less
Molecular
Reagents
less
  • All nucleic 53
    cDNA 53

    Microarray probesets 2
Other
Accession IDs
less
MGI:2140955, MGI:7790832
References
more
  • Summaries
    All 44
    Developmental Gene Expression 4
    Phenotypes 21
  • Earliest
    J:5021 Batchelor AL, et al., A comparison of the mutagenic effectiveness of chronic neutron- and gamma-irradiation of mouse spermatogonia. Mutat Res. 1966 Jun;3(3):218-29
  • Latest
    J:345621 Adams DJ, et al., Genetic determinants of micronucleus formation in vivo. Nature. 2024 Mar;627(8002):130-136

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Funding Information
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last database update
12/17/2024
MGI 6.24
The Jackson Laboratory