0610006L08Rik Gene Detail

Summary

• Symbol
  0610006L08Rik
• Name
  RIKEN cDNA 0610006L08 gene

• Feature Type
  lncRNA gene
• IDs
  MGI:1923503
  NCBI Gene: 76253
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr7:74468415-74503558 bp, - strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 7, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  1332 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1923503	lncRNA gene	Chr7:74468414-74503613 (-)
129S1/SvImJ	ENSMUSG00200035231	lncRNA gene	Chr7:61240116-61275488 (-)
A/J	ENSMUSG00195015522	lncRNA gene	Chr7:65665128-65700313 (-)
AKR/J	ENSMUSG00220021161	lncRNA gene	Chr7:59210880-59246052 (-)
BALB/cJ	ENSMUSG00180013525	lncRNA gene	Chr7:62370677-62405852 (-)
C3H/HeJ	ENSMUSG00175021860	lncRNA gene	Chr7:63141219-63176588 (-)
C57BL/6NJ	ENSMUSG00215031412	lncRNA gene	Chr7:62270900-62305899 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0006569	lincRNA gene	Chr7:77329036-77355608 (-)
CAST/EiJ	ENSTCUG00005004560	lncRNA gene	Chr7:65796380-65831429 (-)
CBA/J	ENSMUSG00210024526	lncRNA gene	Chr7:62999716-63035084 (-)
DBA/2J	ENSMUSG00185001497	lncRNA gene	Chr7:67322521-67357885 (-)
FVB/NJ	ENSMUSG00205028007	lncRNA gene	Chr7:62968835-63004218 (-)
JF1/MsJ	ENSUMUG00000032854	lncRNA gene	Chr7:72083358-72118782 (-)
LP/J	ENSMUSG00230015396	lncRNA gene	Chr7:73404215-73439370 (-)
NOD/ShiLtJ	ENSMUSG00190019679	lncRNA gene	Chr7:63127569-63162564 (-)
NZO/HlLtJ	ENSMUSG00225042851	lncRNA gene	Chr7:71665773-71700928 (-)
PWK/PhJ	ENSLUMG00010017652	lncRNA gene	Chr7:61639485-61674853 (-)
SPRET/EiJ	ENSMSPG00010024553	lncRNA gene	Chr7:62048615-62083507 (-)
WSB/EiJ	ENSIUOG00005023663	lncRNA gene	Chr7:63526370-63561356 (-)

Homology

• Gene Tree
  0610006L08Rik
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  5 phenotype references
  

• All Mutations and Alleles
  2
• Chemically induced (other)
  1
• Radiation induced
  1
• Genomic Mutations
  2 involving 0610006L08Rik
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597
• cDNA Data
  2

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  38
• RefSeq
  3

• Ensembl
  ENSMUSG00000108652 (Evidence)
• NCBI Gene
  76253

Representative Sequences			Length	Strain/Species
genomic	76253	NCBI Gene Model | MGI Sequence Detail	35144	C57BL/6J
transcript	AK002255	GenBank | ENA | DDBJ | MGI Sequence Detail	1590	C57BL/6J

Molecular
Reagents

• All nucleic 2

  cDNA 2

  
  

  Microarray probesets 2

References

• Summaries
  All 17

  Phenotypes 5
• Earliest
  J:88307 Giometti CS, et al., The analysis of recessive lethal mutations in mice by using two-dimensional gel electrophoresis of liver proteins. Mutat Res. 1990 Sep;242(1):47-55
• Latest
  J:80000 The FANTOM Consortium and The RIKEN Genome Exploration Research Group Phase I & II Team, Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Nature. 2002;420:563-573

TSS for 0610006L08Rik:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr73026	Chr7:74503553-74503585 (-)	-11 bp