6530409C15Rik Gene Detail

Summary

• Symbol
  6530409C15Rik
• Name
  RIKEN cDNA 6530409C15 gene

• Feature Type
  lncRNA gene
• IDs
  MGI:1923474
  NCBI Gene: 115490342
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr6:28215498-28234934 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 6, 11.99 cM, cytoband A3
• Mapping Data
  2 experiments

Strain
Comparison

• SNPs within 2kb
  600 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1923474	lncRNA gene	Chr6:28215498-28260861 (+)
129S1/SvImJ	ENSMUSG00200035622	lncRNA gene	Chr6:25264081-25309380 (+)
A/J	ENSMUSG00195009118	lncRNA gene	Chr6:25230422-25275731 (+)
AKR/J	ENSMUSG00220003890	lncRNA gene	Chr6:24823482-24868786 (+)
BALB/cJ	ENSMUSG00180022143	lncRNA gene	Chr6:25362247-25407557 (+)
C3H/HeJ	ENSMUSG00175020655	lncRNA gene	Chr6:25221442-25266743 (+)
C57BL/6NJ	ENSMUSG00215024531	lncRNA gene	Chr6:25254087-25299397 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0003826	antisense lncRNA gene	Chr6:23051756-23099888 (+)
CAST/EiJ	ENSTCUG00005027265	lncRNA gene	Chr6:24808508-24854066 (+)
CBA/J	ENSMUSG00210005050	lncRNA gene	Chr6:25242820-25288125 (+)
DBA/2J	ENSMUSG00185021727	lncRNA gene	Chr6:25346496-25391809 (+)
FVB/NJ	ENSMUSG00205031464	lncRNA gene	Chr6:25299990-25345336 (+)
JF1/MsJ	ENSUMUG00000036358	lncRNA gene	Chr6:25011214-25056622 (+)
LP/J	ENSMUSG00230030368	lncRNA gene	Chr6:26280817-26326117 (+)
NOD/ShiLtJ	ENSMUSG00190033075	lncRNA gene	Chr6:25110532-25155839 (+)
NZO/HlLtJ	ENSMUSG00225014553	lncRNA gene	Chr6:28245770-28291075 (+)
PWK/PhJ	ENSLUMG00010024571	lncRNA gene	Chr6:24809223-24854648 (+)
SPRET/EiJ	ENSMSPG00010022860	lncRNA gene	Chr6:25244928-25290581 (+)
WSB/EiJ	ENSIUOG00005035508	lncRNA gene	Chr6:25376606-25421950 (+)

Homology

• Gene Tree
  6530409C15Rik
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  2
• Targeted
  2
• Find Mice (IMSR)
  2 strains or lines available

Expression

• Assay Results
  597
• cDNA Data
  3

Tissue x Stage Matrix

• Other Mouse Links
  Allen Institute
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  29
• RefSeq
  2
• UniProt
  1

• Ensembl
  ENSMUSG00000043340 (Evidence)
• NCBI Gene
  115490342

Representative Sequences			Length	Strain/Species
genomic	115490342	NCBI Gene Model | MGI Sequence Detail	19437	C57BL/6J
transcript	NR_165173	RefSeq | MGI Sequence Detail	2303	C57BL/6
polypeptide	Q9D357	UniProt | EBI | MGI Sequence Detail	130	Not Applicable

Protein
Information

• UniProt
  1 Sequence

Molecular
Reagents

• All nucleic 3

  cDNA 3

  
  

  Microarray probesets 1

References

• Summaries
  All 14

  Phenotypes 2
• Earliest
  J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
• Latest
  J:173534 Skarnes WC, et al., A conditional knockout resource for the genome-wide study of mouse gene function. Nature. 2011 Jun 16;474(7351):337-42