6530413G14Rik Gene Detail

Summary

• Symbol
  6530413G14Rik
• Name
  RIKEN cDNA 6530413G14 gene

• Feature Type
  lncRNA gene
• IDs
  MGI:1923465
  NCBI Gene: 76215
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr9:22028624-22049053 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 9, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  726 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1923465	lncRNA gene	Chr9:22028624-22049053 (+)
129S1/SvImJ	ENSMUSG00200050245	lncRNA gene	Chr9:18983192-19003615 (+)
A/J	ENSMUSG00195041315	lncRNA gene	Chr9:18819858-18840281 (+)
AKR/J	ENSMUSG00220034218	lncRNA gene	Chr9:18822264-18842692 (+)
BALB/cJ	ENSMUSG00180043408	lncRNA gene	Chr9:18954136-18974565 (+)
C3H/HeJ	ENSMUSG00175043764	lncRNA gene	Chr9:18916653-18937079 (+)
C57BL/6NJ	ENSMUSG00215038875	lncRNA gene	Chr9:18913954-18934383 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005035488	lncRNA gene	Chr9:18960239-18980576 (+)
CBA/J	ENSMUSG00210045654	lncRNA gene	Chr9:18897586-18918003 (+)
DBA/2J	ENSMUSG00185027376	lncRNA gene	Chr9:19012885-19033305 (+)
FVB/NJ	ENSMUSG00205044049	lncRNA gene	Chr9:19248253-19268716 (+)
JF1/MsJ	ENSUMUG00000050721	lncRNA gene	Chr9:19113899-19134387 (+)
LP/J	ENSMUSG00230044689	lncRNA gene	Chr9:19407437-19427907 (+)
NOD/ShiLtJ	ENSMUSG00190045364	lncRNA gene	Chr9:18941210-18961674 (+)
NZO/HlLtJ	ENSMUSG00225051357	lncRNA gene	Chr9:19354824-19375245 (+)
PWK/PhJ	ENSLUMG00010049012	lncRNA gene	Chr9:19004917-19025457 (+)
SPRET/EiJ	ENSMSPG00010026683	lncRNA gene	Chr9:19227853-19247860 (+)
WSB/EiJ	ENSIUOG00005047431	lncRNA gene	Chr9:18483060-18503538 (+)

Homology

• Gene Tree
  6530413G14Rik
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  1 phenotype reference
  

• All Mutations and Alleles
  4
• Gene trapped
  4
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597
• cDNA Data
  1

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  25

• Ensembl
  ENSMUSG00000111856 (Evidence)
• NCBI Gene
  76215

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000111856	Ensembl Gene Model | MGI Sequence Detail	20430	C57BL/6J
transcript	ENSMUST00000215411	Ensembl | MGI Sequence Detail	1474	Not Applicable

Molecular
Reagents

• All nucleic 1

  cDNA 1

  
  

  Microarray probesets 2

References

• Summaries
  All 7

  Phenotypes 1
• Earliest
  J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
• Latest
  J:80000 The FANTOM Consortium and The RIKEN Genome Exploration Research Group Phase I & II Team, Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Nature. 2002;420:563-573