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6330562C20Rik Gene Detail
Summary
  • Symbol
    6330562C20Rik
  • Name
    RIKEN cDNA 6330562C20 gene
  • Feature Type
    lncRNA gene
  • IDs
    MGI:1923443
    NCBI Gene: 76193
  • Alliance
    genome feature page
  • Transcription Start Sites
    2 TSS
Location &
Maps
more
  • Sequence Map
    Chr3:95214387-95222493 bp, - strand
    From Ensembl annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 3, 40.74 cM
  • Mapping Data
    2 experiments
Strain
Comparison
more
  • SNPs within 2kb
    261 from dbSNP Build 142
  • Strain Annotations
    19
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1923443
 lncRNA gene Chr3:95214387-95222493 (-)
129S1/SvImJ ENSMUSG00200045074
 lncRNA gene Chr3:91871901-91887272 (-)
A/J ENSMUSG00195050325
 lncRNA gene Chr3:92196401-92204462 (-)
AKR/J ENSMUSG00220052105
 lncRNA gene Chr3:90583459-90591519 (-)
BALB/cJ ENSMUSG00180042502
 lncRNA gene Chr3:92196181-92204248 (-)
C3H/HeJ ENSMUSG00175034243
 lncRNA gene Chr3:91840090-91848151 (-)
C57BL/6NJ ENSMUSG00215040307
 lncRNA gene Chr3:92558916-92566976 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0003403
 antisense lncRNA gene Chr3:89413315-89421455 (-)
CAST/EiJ ENSTCUG00005049585
 lncRNA gene Chr3:92404793-92412876 (-)
CBA/J ENSMUSG00210051280
 lncRNA gene Chr3:92377551-92385610 (-)
DBA/2J ENSMUSG00185046133
 lncRNA gene Chr3:92794221-92802274 (-)
FVB/NJ ENSMUSG00205050634
 lncRNA gene Chr3:91493907-91501969 (-)
JF1/MsJ ENSUMUG00000053987
 lncRNA gene Chr3:91697617-91705665 (-)
LP/J ENSMUSG00230045398
 lncRNA gene Chr3:94735357-94750728 (-)
NOD/ShiLtJ ENSMUSG00190047316
 lncRNA gene Chr3:92888485-92896552 (-)
NZO/HlLtJ ENSMUSG00225012460
 lncRNA gene Chr3:97157648-97165707 (-)
PWK/PhJ ENSLUMG00010052807
 lncRNA gene Chr3:91677548-91685588 (-)
SPRET/EiJ ENSMSPG00010047008
 lncRNA gene Chr3:91981472-91989661 (-)
WSB/EiJ ENSIUOG00005031885
 lncRNA gene Chr3:92316738-92324798 (-)



Homology
less
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    4 phenotype references
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    597
  • cDNA Data
    3
Sequences &
Gene Models
less
  • All Sequences
    27
  • UniProt
    1
Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000093424 Ensembl Gene Model | MGI Sequence Detail 8107 C57BL/6J ±  kb
transcript ENSMUST00000288985 Ensembl | MGI Sequence Detail 908 Not Applicable  
polypeptide Q3UMJ3 UniProt | EBI | MGI Sequence Detail 144 Not Applicable  
For the selected sequence
Protein
Information
less
  • UniProt
    1 Sequence
Molecular
Reagents
less
  • All nucleic 3
    cDNA 3

    Microarray probesets 3
Other
Accession IDs
less
MGI:3642612
References
more
  • Summaries
    All 16
    Phenotypes 4
  • Earliest
    J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
  • Latest
    J:142754 Hansen GM, et al., Large-scale gene trapping in C57BL/6N mouse embryonic stem cells. Genome Res. 2008 Oct;18(10):1670-9
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
09/01/2026
MGI 6.24 		The Jackson Laboratory