Gm11346 Pseudogene Detail

Summary

• Symbol
  Gm11346
• Name
  predicted gene 11346
• Synonyms
  5830431A10Rik, Gm11347

• Feature Type
  pseudogene
• IDs
  MGI:1923274
  NCBI Gene: 76024
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr13:24782332-24783035 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 13, 10.52 cM
• Mapping Data
  2 experiments

Strain
Comparison

• SNPs within 2kb
  124 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1923274	pseudogene	Chr13:24782107-24788750 (-)
129S1/SvImJ	ENSMUSG00200031108	pseudogene	Chr13:21911659-21920238 (-)
A/J	ENSMUSG00195040725	pseudogene	Chr13:21060924-21069492 (-)
AKR/J	ENSMUSG00220013226	pseudogene	Chr13:20882049-20890626 (-)
BALB/cJ	ENSMUSG00180024065	pseudogene	Chr13:21379360-21387933 (-)
C3H/HeJ	ENSMUSG00175032560	pseudogene	Chr13:21385656-21394228 (-)
C57BL/6NJ	ENSMUSG00215015098	pseudogene	Chr13:21541179-21549767 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0036831	pseudogene	Chr13:20408714-20415865 (-)
CAST/EiJ	ENSTCUG00005011220	pseudogene	Chr13:21550890-21559834 (-)
CBA/J	ENSMUSG00210028167	pseudogene	Chr13:21340802-21349378 (-)
DBA/2J	ENSMUSG00185021464	pseudogene	Chr13:22162755-22171336 (-)
FVB/NJ	ENSMUSG00205034663	pseudogene	Chr13:21181454-21190030 (-)
JF1/MsJ	ENSUMUG00000023377	pseudogene	Chr13:21829499-21838408 (-)
LP/J	ENSMUSG00230021870	pseudogene	Chr13:31489802-31498374 (-)
NOD/ShiLtJ	ENSMUSG00190039263	pseudogene	Chr13:21156672-21165591 (-)
NZO/HlLtJ	ENSMUSG00225046310	pseudogene	Chr13:25275031-25283603 (-)
PWK/PhJ	ENSLUMG00010030947	pseudogene	Chr13:20697579-20706183 (-)
SPRET/EiJ	ENSMSPG00010027402	pseudogene	Chr13:20522459-20531228 (-)
WSB/EiJ	ENSIUOG00005017367	pseudogene	Chr13:20685822-20696143 (-)

Homology

• Gene Tree
  Gm11346
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  3 phenotype references
  

• All Mutations and Alleles
  1
• Chemically induced (other)
  1
• Genomic Mutations
  1 involving Gm11346
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597
• cDNA Data
  5

Tissue x Stage Matrix

• Other Mouse Links
  Allen Institute
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  28
• RefSeq
  1

• Ensembl
  ENSMUSG00000085603 (Evidence)
• NCBI Gene
  76024

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000085603	Ensembl Gene Model | MGI Sequence Detail	704	C57BL/6J
transcript	ENSMUST00000118346	Ensembl | MGI Sequence Detail	704	Not Applicable

Molecular
Reagents

• All nucleic 5

  cDNA 5

  
  

  Microarray probesets 1

Other
Accession IDs

MGI:2145238, MGI:3757570

References

• Summaries
  All 18

  Phenotypes 3
• Earliest
  J:182573 Roderick TH, Producing and detecting paracentric chromosomal inversions in mice. Mutat Res. 1971 Jan;11(1):59-69
• Latest
  J:80000 The FANTOM Consortium and The RIKEN Genome Exploration Research Group Phase I & II Team, Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Nature. 2002;420:563-573

TSS for Gm11346:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr121795	Chr13:24783516-24783524 (-)	-485 bp