5830405F06Rik Gene Detail

Summary

• Symbol
  5830405F06Rik
• Name
  RIKEN cDNA 5830405F06 gene

• Feature Type
  lncRNA gene
• IDs
  MGI:1923265
• Alliance
  genome feature page
• Transcription Start Sites
  2 TSS

Location &
Maps

• Sequence Map
  Chr6:41032817-41040036 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 6, cytoband B2
• Mapping Data
  2 experiments

Strain
Comparison

• SNPs within 2kb
  423 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1923265	lncRNA gene	Chr6:41032817-41040036 (+)
129S1/SvImJ	ENSMUSG00200046981	lncRNA gene	Chr6:38090657-38097882 (+)
A/J	ENSMUSG00195043905	lncRNA gene	Chr6:38060315-38067540 (+)
AKR/J	ENSMUSG00220009010	lncRNA gene	Chr6:37665551-37672774 (+)
BALB/cJ	ENSMUSG00180048418	lncRNA gene	Chr6:38188744-38195967 (+)
C3H/HeJ	ENSMUSG00175050684	lncRNA gene	Chr6:38015863-38023086 (+)
C57BL/6NJ	ENSMUSG00215048173	lncRNA gene	Chr6:38114515-38121734 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0006325	lincRNA gene	Chr6:35593917-35603221 (+)
CAST/EiJ	ENSTCUG00005036639	lncRNA gene	Chr6:37580705-37589209 (+)
CBA/J	ENSMUSG00210052571	lncRNA gene	Chr6:38067622-38074847 (+)
DBA/2J	ENSMUSG00185050529	lncRNA gene	Chr6:38170101-38177324 (+)
FVB/NJ	no annotation
JF1/MsJ	ENSUMUG00000025478	lncRNA gene	Chr6:37780192-37789339 (+)
LP/J	ENSMUSG00230043862	lncRNA gene	Chr6:39093806-39101029 (+)
NOD/ShiLtJ	ENSMUSG00190049559	lncRNA gene	Chr6:37959571-37966790 (+)
NZO/HlLtJ	ENSMUSG00225020848	lncRNA gene	Chr6:41076482-41083701 (+)
PWK/PhJ	ENSLUMG00010047490	lncRNA gene	Chr6:37542689-37551091 (+)
SPRET/EiJ	ENSMSPG00010032149	lncRNA gene	Chr6:38289727-38298414 (+)
WSB/EiJ	ENSIUOG00005034826	lncRNA gene	Chr6:38287632-38296087 (+)

Homology

• Gene Tree
  5830405F06Rik
  

Expression

• Assay Results
  597
• cDNA Data
  1

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  25
• UniProt
  1

• Ensembl
  ENSMUSG00000103586 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000103586	Ensembl Gene Model | MGI Sequence Detail	7220	C57BL/6J
transcript	ENSMUST00000192753	Ensembl | MGI Sequence Detail	1755	Not Applicable
polypeptide	Q9D3G4	UniProt | EBI | MGI Sequence Detail	127	Not Applicable

Protein
Information

• UniProt
  1 Sequence
• InterPro Domains
  IPR007110 Immunoglobulin-like domain
  IPR036179 Immunoglobulin-like domain superfamily
  IPR013783 Immunoglobulin-like fold
  IPR013106 Immunoglobulin V-set domain
  IPR050413 T cell receptor beta variable

Molecular
Reagents

• All nucleic 1

  cDNA 1

  
  

  Microarray probesets 1

References

• Summaries
  All 9
• Earliest
  J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
• Latest
  J:80000 The FANTOM Consortium and The RIKEN Genome Exploration Research Group Phase I & II Team, Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Nature. 2002;420:563-573

TSS for 5830405F06Rik:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr55796	Chr6:41032797-41032827 (+)	-5 bp
Tssr55797	Chr6:41032835-41032861 (+)	31 bp