Tmem150cos Gene Detail

Summary

• Symbol
  Tmem150cos
• Name
  transmembrane protein 150C, opposite strand
• Synonyms
  5830403M04Rik

• Feature Type
  antisense lncRNA gene
  BioType Conflict
  
• IDs
  MGI:1923253
  NCBI Gene: 76003
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr5:100225821-100243132 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 5, 48.46 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  611 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1923253	antisense lncRNA gene	Chr5:100225821-100243132 (+)
129S1/SvImJ	ENSMUSG00200006852	lncRNA gene	Chr5:93966153-93983474 (+)
A/J	ENSMUSG00195035497	lncRNA gene	Chr5:93517179-93534490 (+)
AKR/J	ENSMUSG00220039876	lncRNA gene	Chr5:92986673-93003987 (+)
BALB/cJ	ENSMUSG00180036965	lncRNA gene	Chr5:93673315-93690644 (+)
C3H/HeJ	ENSMUSG00175035370	lncRNA gene	Chr5:95777979-95795290 (+)
C57BL/6NJ	ENSMUSG00215021572	lncRNA gene	Chr5:93609866-93627177 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0003713	antisense lncRNA gene	Chr5:93016271-93033542 (+)
CAST/EiJ	ENSTCUG00005024261	lncRNA gene	Chr5:92993894-93011256 (+)
CBA/J	ENSMUSG00210035426	lncRNA gene	Chr5:94528317-94545622 (+)
DBA/2J	ENSMUSG00185039341	lncRNA gene	Chr5:97446652-97463967 (+)
FVB/NJ	ENSMUSG00205044228	lncRNA gene	Chr5:93423440-93440769 (+)
JF1/MsJ	ENSUMUG00000048040	lncRNA gene	Chr5:100432950-100450230 (+)
LP/J	ENSMUSG00230033143	lncRNA gene	Chr5:101507869-101525194 (+)
NOD/ShiLtJ	ENSMUSG00190030115	lncRNA gene	Chr5:93434831-93452147 (+)
NZO/HlLtJ	ENSMUSG00225013128	lncRNA gene	Chr5:109262482-109279801 (+)
PWK/PhJ	ENSLUMG00010015687	lncRNA gene	Chr5:92555654-92572896 (+)
SPRET/EiJ	ENSMSPG00010027006	lncRNA gene	Chr5:95455273-95472824 (+)
WSB/EiJ	ENSIUOG00005032890	lncRNA gene	Chr5:96170292-96187674 (+)

Homology

• Gene Tree
  Tmem150cos
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  8 phenotype references
  

• All Mutations and Alleles
  4
• Chemically induced (other)
  1
• Gene trapped
  1
• Radiation induced
  1
• Spontaneous
  1
• Genomic Mutations
  3 involving Tmem150cos
• Find Mice (IMSR)
  2 strains or lines available

Expression

• Assay Results
  597
• cDNA Data
  4

Tissue x Stage Matrix

• Other Mouse Links
  Allen Institute
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  29
• RefSeq
  1

• Ensembl
  ENSMUSG00000086259 (Evidence)
• NCBI Gene
  76003

Representative Sequences			Length	Strain/Species
genomic	76003	NCBI Gene Model | MGI Sequence Detail	17312	C57BL/6J
transcript	NR_045993	RefSeq | MGI Sequence Detail	1340	C57BL/6

Molecular
Reagents

• All nucleic 4

  cDNA 4

  
  

  Microarray probesets 2

References

• Summaries
  All 20

  Phenotypes 8
• Earliest
  J:134667 Roderick TH, et al., Two radiation-induced chromosomal inversions in mice (Mus musculus). Proc Natl Acad Sci U S A. 1970 Oct;67(2):961-7
• Latest
  J:153498 Diez-Roux G, et al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo. PLoS Biol. 2011;9(1):e1000582

TSS for Tmem150cos:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr47476	Chr5:100225749-100225781 (+)	-56 bp