5033430I15Rik Gene Detail

Summary

• Symbol
  5033430I15Rik
• Name
  RIKEN cDNA 5033430I15 gene

• Feature Type
  lncRNA gene
• IDs
  MGI:1923250
  NCBI Gene: 76000
• Alliance
  genome feature page
• Transcription Start Sites
  2 TSS

Location &
Maps

• Sequence Map
  Chr13:46118700-46119984 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 13, 22.95 cM, cytoband B1
• Mapping Data
  2 experiments

Strain
Comparison

• SNPs within 2kb
  59 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1923250	lncRNA gene	Chr13:46118650-46125010 (+)
129S1/SvImJ	ENSMUSG00200036636	lncRNA gene	Chr13:43365187-43367439 (+)
A/J	ENSMUSG00195031820	lncRNA gene	Chr13:42425306-42427554 (+)
AKR/J	ENSMUSG00220009813	lncRNA gene	Chr13:42237457-42239703 (+)
BALB/cJ	ENSMUSG00180009133	lncRNA gene	Chr13:42731786-42734034 (+)
C3H/HeJ	ENSMUSG00175031730	lncRNA gene	Chr13:42696083-42698331 (+)
C57BL/6NJ	ENSMUSG00215006810	lncRNA gene	Chr13:42862618-42864864 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0004956	lincRNA gene	Chr13:41207683-41208945 (+)
CAST/EiJ	ENSTCUG00005033919	lncRNA gene	Chr13:42771522-42773750 (+)
CBA/J	ENSMUSG00210028958	lncRNA gene	Chr13:42701548-42703798 (+)
DBA/2J	ENSMUSG00185034116	lncRNA gene	Chr13:43521628-43523878 (+)
FVB/NJ	ENSMUSG00205013502	lncRNA gene	Chr13:42477007-42479258 (+)
JF1/MsJ	ENSUMUG00000020118	lncRNA gene	Chr13:43056442-43058686 (+)
LP/J	ENSMUSG00230030277	lncRNA gene	Chr13:52833827-52836075 (+)
NOD/ShiLtJ	ENSMUSG00190012930	lncRNA gene	Chr13:42920293-42922543 (+)
NZO/HlLtJ	ENSMUSG00225036218	lncRNA gene	Chr13:46603921-46606169 (+)
PWK/PhJ	ENSLUMG00010021939	lncRNA gene	Chr13:41888155-41890400 (+)
SPRET/EiJ	ENSMSPG00010030425	lncRNA gene	Chr13:41980211-41982444 (+)
WSB/EiJ	ENSIUOG00005028416	lncRNA gene	Chr13:42083805-42086043 (+)

Homology

• Human Ortholog
  ATXN1-AS1, ATXN1 antisense RNA 1

• Vertebrate Orthologs
  1

Vertebrate Orthology Source

Alliance of Genome Resources

• Human Ortholog
  ATXN1-AS1, ATXN1 antisense RNA 1
  
• Links
  HGNC:40515

  NCBI Gene ID: 101928433

  
  
• Chr Location
  chr6:16761138-16766883 (+)  GRCh38

---

• MGI Vertebrate Homology
  5033430I15Rik stringent orthology
  1 human;1 mouse
  
• HCOP
  vertebrate homology predictions: ATXN1-AS1
• Gene Tree
  5033430I15Rik
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  3 phenotype references
  

• All Mutations and Alleles
  1
• Chemically induced (other)
  1
• Genomic Mutations
  1 involving 5033430I15Rik
• Find Mice (IMSR)
  1 strains or lines available

Expression

• Assay Results
  597
• cDNA Data
  4

Tissue x Stage Matrix

• Other Mouse Links
  Allen Institute
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  36
• RefSeq
  1
• UniProt
  1

• Ensembl
  ENSMUSG00000038152 (Evidence)
• NCBI Gene
  76000

Representative Sequences			Length	Strain/Species
genomic	76000	NCBI Gene Model | MGI Sequence Detail	1285	C57BL/6J
transcript	NR_167678	RefSeq | MGI Sequence Detail	758	C57BL/6
polypeptide	Q9D3Q2	UniProt | EBI | MGI Sequence Detail	138	Not Applicable

Protein
Information

• UniProt
  1 Sequence

Molecular
Reagents

• All nucleic 4

  cDNA 4

  
  

  Microarray probesets 3

References

• Summaries
  All 18

  Phenotypes 3
• Earliest
  J:182573 Roderick TH, Producing and detecting paracentric chromosomal inversions in mice. Mutat Res. 1971 Jan;11(1):59-69
• Latest
  J:80000 The FANTOM Consortium and The RIKEN Genome Exploration Research Group Phase I & II Team, Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Nature. 2002;420:563-573

TSS for 5033430I15Rik:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr119584	Chr13:46118687-46118707 (+)	-3 bp
Tssr119585	Chr13:46118931-46118952 (+)	242 bp