5033425G24Rik Gene Detail

Summary

• Symbol
  5033425G24Rik
• Name
  RIKEN cDNA 5033425G24 gene

• Feature Type
  lncRNA gene
• IDs
  MGI:1923248
  NCBI Gene: 75998
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr12:72806550-72807829 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 12, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  74 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1923248	lncRNA gene	Chr12:72806550-72807829 (-)
129S1/SvImJ	ENSMUSG00200032489	lncRNA gene	Chr12:64708408-64709662 (-)
A/J	ENSMUSG00195015332	lncRNA gene	Chr12:67419282-67420556 (-)
AKR/J	ENSMUSG00220015340	lncRNA gene	Chr12:65227328-65228602 (-)
BALB/cJ	ENSMUSG00180035469	lncRNA gene	Chr12:66418287-66419561 (-)
C3H/HeJ	ENSMUSG00175028943	lncRNA gene	Chr12:69545123-69546397 (-)
C57BL/6NJ	ENSMUSG00215033881	lncRNA gene	Chr12:65798594-65799868 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005036035	lncRNA gene	Chr12:65717469-65718738 (-)
CBA/J	ENSMUSG00210030741	lncRNA gene	Chr12:65982371-65983645 (-)
DBA/2J	ENSMUSG00185005050	lncRNA gene	Chr12:67888109-67889383 (-)
FVB/NJ	ENSMUSG00205032786	lncRNA gene	Chr12:65611181-65612454 (-)
JF1/MsJ	ENSUMUG00000026656	lncRNA gene	Chr12:71838368-71839640 (-)
LP/J	ENSMUSG00230022105	lncRNA gene	Chr12:74844410-74845664 (-)
NOD/ShiLtJ	ENSMUSG00190013362	lncRNA gene	Chr12:65042716-65043988 (-)
NZO/HlLtJ	ENSMUSG00225038822	lncRNA gene	Chr12:76895865-76897119 (-)
PWK/PhJ	ENSLUMG00010032800	lncRNA gene	Chr12:65903625-65904892 (-)
SPRET/EiJ	ENSMSPG00010028783	lncRNA gene	Chr12:67615278-67616554 (-)
WSB/EiJ	ENSIUOG00005012565	lncRNA gene	Chr12:65668127-65669399 (-)

Homology

• Gene Tree
  5033425G24Rik
  

Expression

• cDNA Data
  1

• Other Mouse Links
  GEO

Sequences &
Gene Models

• All Sequences
  23

• Ensembl
  ENSMUSG00000120877 (Evidence)
• NCBI Gene
  75998

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000120877	Ensembl Gene Model | MGI Sequence Detail	1280	C57BL/6J
transcript	ENSMUST00000246242	Ensembl | MGI Sequence Detail	1275	Not Applicable

Molecular
Reagents

• All nucleic 1

  cDNA 1

  
  

  Microarray probesets 1

References

• Summaries
  All 7
• Earliest
  J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
• Latest
  J:80000 The FANTOM Consortium and The RIKEN Genome Exploration Research Group Phase I & II Team, Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Nature. 2002;420:563-573

TSS for 5033425G24Rik:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr116628	Chr12:72807816-72807864 (-)	-11 bp