5031434O11Rik Gene Detail

Summary

• Symbol
  5031434O11Rik
• Name
  RIKEN cDNA 5031434O11 gene
• Synonyms
  Gm2370

• Feature Type
  lncRNA gene
• IDs
  MGI:1923230
  NCBI Gene: 100039684
• Alliance
  genome feature page
• Transcription Start Sites
  2 TSS

Location &
Maps

• Sequence Map
  Chr3:51467406-51474538 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 3, 22.51 cM
• Mapping Data
  3 experiments

Strain
Comparison

• SNPs within 2kb
  336 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1923230	lncRNA gene	Chr3:51467135-51474546 (+)
129S1/SvImJ	ENSMUSG00200000572	lncRNA gene	Chr3:48295519-48302601 (+)
A/J	ENSMUSG00195000802	lncRNA gene	Chr3:48253887-48260970 (+)
AKR/J	ENSMUSG00220016050	lncRNA gene	Chr3:48308405-48315487 (+)
BALB/cJ	ENSMUSG00180000658	lncRNA gene	Chr3:48331212-48338299 (+)
C3H/HeJ	ENSMUSG00175002153	lncRNA gene	Chr3:48166217-48173301 (+)
C57BL/6NJ	ENSMUSG00215000611	lncRNA gene	Chr3:48600734-48607816 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0013634	unclassified non-coding RNA gene	Chr3:45207797-45215230 (+)
CAST/EiJ	ENSTCUG00005010095	lncRNA gene	Chr3:47984632-47991726 (+)
CBA/J	ENSMUSG00210000974	lncRNA gene	Chr3:48279080-48286164 (+)
DBA/2J	ENSMUSG00185000439	lncRNA gene	Chr3:48516264-48523346 (+)
FVB/NJ	ENSMUSG00205010139	lncRNA gene	Chr3:47498464-47505546 (+)
JF1/MsJ	ENSUMUG00000028741	lncRNA gene	Chr3:47942638-47949714 (+)
LP/J	ENSMUSG00230000549	lncRNA gene	Chr3:50467715-50474797 (+)
NOD/ShiLtJ	ENSMUSG00190000640	lncRNA gene	Chr3:48646170-48653252 (+)
NZO/HlLtJ	ENSMUSG00225018497	lncRNA gene	Chr3:53090774-53097857 (+)
PWK/PhJ	ENSLUMG00010010375	lncRNA gene	Chr3:48108745-48115821 (+)
SPRET/EiJ	ENSMSPG00010007686	lncRNA gene	Chr3:48762385-48769429 (+)
WSB/EiJ	ENSIUOG00005000588	lncRNA gene	Chr3:48447267-48454350 (+)

Homology

• Gene Tree
  5031434O11Rik
  

Human Diseases

• References
  1 with disease annotations

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  7 phenotype references
  

• All Mutations and Alleles
  2
• Radiation induced
  2
• Genomic Mutations
  2 involving 5031434O11Rik
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597
• cDNA Data
  10

Tissue x Stage Matrix

• Other Mouse Links
  Allen Institute
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  52
• RefSeq
  5

• Ensembl
  ENSMUSG00000097885 (Evidence)
• NCBI Gene
  100039684

Representative Sequences			Length	Strain/Species
genomic	100039684	NCBI Gene Model | MGI Sequence Detail	7133	C57BL/6J
transcript	NR_033624	RefSeq | MGI Sequence Detail	2311	C57BL/6

Molecular
Reagents

• All nucleic 10

  cDNA 10

  
  

  Microarray probesets 3

Other
Accession IDs

MGI:2139739, MGI:3780538

References

• Summaries
  All 23

  Diseases 1

  Phenotypes 7
• Earliest
  J:64276 Lyon MF, et al., Dose-response curves for radiation-induced gene mutations in mouse oocytes and their interpretation. Mutat Res. 1979 Nov;63(1):161-73
• Latest
  J:302829 Lu J, et al., Mouse models for human hyperuricaemia: a critical review. Nat Rev Rheumatol. 2019 Jul;15(7):413-426

TSS for 5031434O11Rik:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr29063	Chr3:51467190-51467202 (+)	-210 bp
Tssr29064	Chr3:51467394-51467397 (+)	-10 bp