5033424D13Rik Gene Detail

Summary

• Symbol
  5033424D13Rik
• Name
  RIKEN cDNA 5033424D13 gene

• Feature Type
  lncRNA gene
• IDs
  MGI:1923225
  NCBI Gene: 75975
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr12:108844695-108845342 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 12, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  113 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1923225	lncRNA gene	Chr12:108844695-108845342 (+)
129S1/SvImJ	ENSMUSG00200028752	unclassified gene	Chr12:100617998-100618645 (+)
A/J	ENSMUSG00195045807	unclassified gene	Chr12:103178974-103179630 (+)
AKR/J	ENSMUSG00220043812	unclassified gene	Chr12:101060819-101061466 (+)
BALB/cJ	ENSMUSG00180049606	unclassified gene	Chr12:102381094-102381741 (+)
C3H/HeJ	ENSMUSG00175040289	unclassified gene	Chr12:104988793-104989440 (+)
C57BL/6NJ	ENSMUSG00215050469	unclassified gene	Chr12:101654031-101654678 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005019376	unclassified gene	Chr12:101133315-101133971 (+)
CBA/J	ENSMUSG00210036007	unclassified gene	Chr12:102050372-102051019 (+)
DBA/2J	ENSMUSG00185029467	unclassified gene	Chr12:103838365-103839021 (+)
FVB/NJ	ENSMUSG00205019108	unclassified gene	Chr12:101068594-101069241 (+)
JF1/MsJ	ENSUMUG00000025827	unclassified gene	Chr12:108593279-108593926 (+)
LP/J	ENSMUSG00230032259	unclassified gene	Chr12:110882931-110883578 (+)
NOD/ShiLtJ	ENSMUSG00190038474	unclassified gene	Chr12:84164144-84164791 (-)
NZO/HlLtJ	ENSMUSG00225039779	unclassified gene	Chr12:112641640-112642287 (+)
PWK/PhJ	ENSLUMG00010045222	unclassified gene	Chr12:102071057-102071704 (+)
SPRET/EiJ	ENSMSPG00010018489	unclassified gene	Chr12:104373720-104374376 (+)
WSB/EiJ	ENSIUOG00005009699	unclassified gene	Chr12:101069421-101070077 (+)

Homology

• Gene Tree
  5033424D13Rik
  

Expression

• Assay Results
  597
• cDNA Data
  1

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000112981 (Evidence)
• NCBI Gene
  75975

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000112981	Ensembl Gene Model | MGI Sequence Detail	648	C57BL/6J
transcript	AK017190	GenBank | ENA | DDBJ | MGI Sequence Detail	651	C57BL/6J

Molecular
Reagents

• All nucleic 1

  cDNA 1

References

• Summaries
  All 5
• Earliest
  J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
• Latest
  J:80000 The FANTOM Consortium and The RIKEN Genome Exploration Research Group Phase I & II Team, Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Nature. 2002;420:563-573