5033403F01Rik Gene Detail

Summary

• Symbol
  5033403F01Rik
• Name
  RIKEN cDNA 5033403F01 gene

• Feature Type
  lncRNA gene
• IDs
  MGI:1923208
  NCBI Gene: 75958
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr13:39144595-39150273 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 13, 18.63 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  255 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1923208	lncRNA gene	Chr13:39132104-39190673 (+)
129S1/SvImJ	ENSMUSG00200013483	lncRNA gene	Chr13:36389148-36395132 (+)
A/J	ENSMUSG00195034727	lncRNA gene	Chr13:35467794-35473780 (+)
AKR/J	ENSMUSG00220034470	lncRNA gene	Chr13:35238640-35244626 (+)
BALB/cJ	ENSMUSG00180008117	lncRNA gene	Chr13:35773322-35779309 (+)
C3H/HeJ	ENSMUSG00175014245	lncRNA gene	Chr13:35725878-35731864 (+)
C57BL/6NJ	ENSMUSG00215016673	lncRNA gene	Chr13:35878957-35884943 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0004950	lincRNA gene	Chr13:34319874-34325583 (+)
CAST/EiJ	ENSTCUG00005035708	lncRNA gene	Chr13:35840702-35846716 (+)
CBA/J	ENSMUSG00210012163	lncRNA gene	Chr13:35733523-35739509 (+)
DBA/2J	ENSMUSG00185033142	lncRNA gene	Chr13:36544097-36550083 (+)
FVB/NJ	ENSMUSG00205038203	lncRNA gene	Chr13:35419350-35425334 (+)
JF1/MsJ	ENSUMUG00000033153	lncRNA gene	Chr13:36129642-36135643 (+)
LP/J	ENSMUSG00230017913	lncRNA gene	Chr13:45876451-45882437 (+)
NOD/ShiLtJ	ENSMUSG00190012407	lncRNA gene	Chr13:35940092-35946078 (+)
NZO/HlLtJ	ENSMUSG00225035614	lncRNA gene	Chr13:39659451-39665435 (+)
PWK/PhJ	ENSLUMG00010031790	lncRNA gene	Chr13:34943637-34949643 (+)
SPRET/EiJ	ENSMSPG00010011660	lncRNA gene	Chr13:34958205-34963497 (+)
WSB/EiJ	ENSIUOG00005028490	lncRNA gene	Chr13:35080128-35086114 (+)

Homology

• Gene Tree
  5033403F01Rik
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  3 phenotype references
  

• All Mutations and Alleles
  1
• Chemically induced (other)
  1
• Genomic Mutations
  1 involving 5033403F01Rik
• Find Mice (IMSR)
  0 strains or lines available

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  597
• cDNA Data
  2

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  40
• RefSeq
  1

• Ensembl
  ENSMUSG00000096932 (Evidence)
• NCBI Gene
  75958

Representative Sequences			Length	Strain/Species
genomic	75958	NCBI Gene Model | MGI Sequence Detail	5679	C57BL/6J
transcript	NR_131019	RefSeq | MGI Sequence Detail	1370	C57BL/6

Molecular
Reagents

• All nucleic 2

  cDNA 2

  
  

  Microarray probesets 1

References

• Summaries
  All 13

  Phenotypes 3
• Earliest
  J:182573 Roderick TH, Producing and detecting paracentric chromosomal inversions in mice. Mutat Res. 1971 Jan;11(1):59-69
• Latest
  J:80000 The FANTOM Consortium and The RIKEN Genome Exploration Research Group Phase I & II Team, Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Nature. 2002;420:563-573