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5033406O09Rik Gene Detail
Summary
  • Symbol
    5033406O09Rik
  • Name
    RIKEN cDNA 5033406O09 gene
  • Synonyms
    9130204G15Rik
Location &
Maps
more
  • Sequence Map
    Chr12:111908425-111910916 bp, - strand
    From NCBI annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 12, 61.14 cM, cytoband F2
  • Mapping Data
    2 experiments
Strain
Comparison
more
  • SNPs within 2kb
    241 from dbSNP Build 142
  • Strain Annotations
    17
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1923205
 lncRNA gene Chr12:111908398-111913497 (-)
129S1/SvImJ ENSMUSG00200029814
 lncRNA gene Chr12:103686638-103689131 (-)
A/J ENSMUSG00195049062
 lncRNA gene Chr12:106218022-106220532 (-)
AKR/J ENSMUSG00220042750
 lncRNA gene Chr12:104115637-104118140 (-)
BALB/cJ ENSMUSG00180049551
 lncRNA gene Chr12:105449768-105452261 (-)
C3H/HeJ ENSMUSG00175040599
 lncRNA gene Chr12:108031991-108034494 (-)
C57BL/6NJ ENSMUSG00215048105
 lncRNA gene Chr12:104722722-104725215 (-)
CAROLI/EiJ no annotation
CAST/EiJ ENSTCUG00005043138
 lncRNA gene Chr12:104203129-104205638 (-)
CBA/J ENSMUSG00210034937
 lncRNA gene Chr12:105093396-105095899 (-)
DBA/2J ENSMUSG00185029393
 lncRNA gene Chr12:106911984-106914494 (-)
FVB/NJ ENSMUSG00205048282
 lncRNA gene Chr12:104139142-104141648 (-)
JF1/MsJ ENSUMUG00000023037
 lncRNA gene Chr12:111683354-111685847 (-)
LP/J ENSMUSG00230045409
 lncRNA gene Chr12:113951188-113953681 (-)
NOD/ShiLtJ ENSMUSG00190049419
 lncRNA gene Chr12:81095356-81097849 (+)
NZO/HlLtJ no annotation
PWK/PhJ ENSLUMG00010046308
 lncRNA gene Chr12:105136683-105139193 (-)
SPRET/EiJ ENSMSPG00010021562
 lncRNA gene Chr12:107421003-107423484 (-)
WSB/EiJ ENSIUOG00005037812
 lncRNA gene Chr12:104122599-104125109 (-)



Homology
less
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    2 phenotype references
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    599
  • Tissues
    2
  • cDNA Data
    9
  • Literature Summary
    1
Sequences &
Gene Models
less
  • All Sequences
    43
  • RefSeq
    1
Representative SequencesLengthStrain/SpeciesFlank
genomic 77675 NCBI Gene Model | MGI Sequence Detail 2492 C57BL/6J ±  kb
transcript NR_029464 RefSeq | MGI Sequence Detail 1729 C57BL/6  
For the selected sequence
Molecular
Reagents
less
  • All nucleic 10
    cDNA 9
    Primer pair 1

    Microarray probesets 1
Other
Accession IDs
less
MGI:1924925
References
more
  • Summaries
    All 14
    Developmental Gene Expression 1
    Phenotypes 2
  • Earliest
    J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
  • Latest
    J:284183 George MR, et al., Minimal in vivo requirements for developmentally regulated cardiac long intergenic non-coding RNAs. Development. 2019 Dec 9;146(23):dev185314
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
09/08/2026
MGI 6.24 		The Jackson Laboratory