4930572K03Rik Gene Detail

Summary

• Symbol
  4930572K03Rik
• Name
  RIKEN cDNA 4930572K03 gene

• Feature Type
  lncRNA gene
• IDs
  MGI:1923166
  NCBI Gene: 75916
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr5:127247629-127261420 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 5, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  565 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1923166	lncRNA gene	Chr5:127247601-127261422 (+)
129S1/SvImJ	ENSMUSG00200030046	lncRNA gene	Chr5:120985793-120999569 (+)
A/J	ENSMUSG00195013005	lncRNA gene	Chr5:120519260-120533036 (+)
AKR/J	ENSMUSG00220048226	lncRNA gene	Chr5:119997321-120011100 (+)
BALB/cJ	ENSMUSG00180041160	lncRNA gene	Chr5:120626895-120640671 (+)
C3H/HeJ	ENSMUSG00175043349	lncRNA gene	Chr5:122603214-122616991 (+)
C57BL/6NJ	ENSMUSG00215044061	lncRNA gene	Chr5:120660476-120674274 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0006208	lincRNA gene	Chr5:120068012-120081945 (+)
CAST/EiJ	ENSTCUG00005042232	lncRNA gene	Chr5:119868776-119882716 (+)
CBA/J	ENSMUSG00210010506	lncRNA gene	Chr5:121354056-121367836 (+)
DBA/2J	ENSMUSG00185008473	lncRNA gene	Chr5:124410077-124423932 (+)
FVB/NJ	ENSMUSG00205047253	lncRNA gene	Chr5:120287703-120301477 (+)
JF1/MsJ	ENSUMUG00000053354	lncRNA gene	Chr5:127299359-127313283 (+)
LP/J	ENSMUSG00230048461	lncRNA gene	Chr5:128511846-128525620 (+)
NOD/ShiLtJ	ENSMUSG00190048333	lncRNA gene	Chr5:120296945-120310863 (+)
NZO/HlLtJ	ENSMUSG00225014747	lncRNA gene	Chr5:136203274-136217129 (+)
PWK/PhJ	ENSLUMG00010044664	lncRNA gene	Chr5:119173243-119192780 (+)
SPRET/EiJ	ENSMSPG00010033675	lncRNA gene	Chr5:122506841-122520513 (+)
WSB/EiJ	ENSIUOG00005020826	lncRNA gene	Chr5:122977942-122991704 (+)

Homology

• Gene Tree
  4930572K03Rik
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  5 phenotype references
  

• All Mutations and Alleles
  2
• Chemically induced (other)
  1
• Radiation induced
  1
• Genomic Mutations
  2 involving 4930572K03Rik
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597
• cDNA Data
  3

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  55
• RefSeq
  1

• Ensembl
  ENSMUSG00000105308 (Evidence)
• NCBI Gene
  75916

Representative Sequences			Length	Strain/Species
genomic	75916	NCBI Gene Model | MGI Sequence Detail	13792	C57BL/6J
transcript	NR_045371	RefSeq | MGI Sequence Detail	931	ZRU/MplStud

Molecular
Reagents

• All nucleic 3

  cDNA 3

References

• Summaries
  All 13

  Phenotypes 5
• Earliest
  J:134667 Roderick TH, et al., Two radiation-induced chromosomal inversions in mice (Mus musculus). Proc Natl Acad Sci U S A. 1970 Oct;67(2):961-7
• Latest
  J:80000 The FANTOM Consortium and The RIKEN Genome Exploration Research Group Phase I & II Team, Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Nature. 2002;420:563-573

TSS for 4930572K03Rik:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr48958	Chr5:127247613-127247643 (+)	-1 bp