4930579G18Rik Gene Detail

Summary

• Symbol
  4930579G18Rik
• Name
  RIKEN cDNA 4930579G18 gene

• Feature Type
  lncRNA gene
• IDs
  MGI:1923163
  NCBI Gene: 75913
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr14:54887968-54892064 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 14, 27.88 cM, cytoband C1
• Mapping Data
  2 experiments

Strain
Comparison

• SNPs within 2kb
  82 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1923163	lncRNA gene	Chr14:54887968-54892557 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0003246	antisense lncRNA gene	Chr14:48616568-48620699 (+)
A/J	MGP_AJ_G0003222	antisense lncRNA gene	Chr14:47662985-47667104 (+)
AKR/J	MGP_AKRJ_G0003205	antisense lncRNA gene	Chr14:49387930-49392049 (+)
BALB/cJ	MGP_BALBcJ_G0003211	antisense lncRNA gene	Chr14:47637453-47641557 (+)
C3H/HeJ	MGP_C3HHeJ_G0003164	antisense lncRNA gene	Chr14:49080074-49084271 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0003353	antisense lncRNA gene	Chr14:51079138-51083234 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0002878	antisense lncRNA gene	Chr14:46078779-46082848 (+)
CAST/EiJ	MGP_CASTEiJ_G0003130	antisense lncRNA gene	Chr14:45323279-45327350 (+)
CBA/J	MGP_CBAJ_G0003161	antisense lncRNA gene	Chr14:52588761-52595280 (+)
DBA/2J	MGP_DBA2J_G0003166	antisense lncRNA gene	Chr14:47402541-47406668 (+)
FVB/NJ	MGP_FVBNJ_G0003185	antisense lncRNA gene	Chr14:46856908-46861355 (+)
LP/J	MGP_LPJ_G0003243	antisense lncRNA gene	Chr14:49620059-49624178 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0003174	antisense lncRNA gene	Chr14:52010822-52014941 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0003355	antisense lncRNA gene	Chr14:48574230-48578349 (+)
PWK/PhJ	MGP_PWKPhJ_G0003088	antisense lncRNA gene	Chr14:43933482-43937635 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0003034	antisense lncRNA gene	Chr14:44556771-44560850 (+)
WSB/EiJ	MGP_WSBEiJ_G0003164	antisense lncRNA gene	Chr14:48861311-48865430 (+)

Homology

• Gene Tree
  4930579G18Rik
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  3 phenotype references
  

• All Mutations and Alleles
  3
• Chemically induced (other)
  1
• Gene trapped
  2
• Genomic Mutations
  1 involving 4930579G18Rik
• Find Mice (IMSR)
  2 strains or lines available

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  706
• cDNA Data
  3

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  24
• RefSeq
  1
• UniProt
  1

• Ensembl
  ENSMUSG00000040840 (Evidence)
• NCBI Gene
  75913

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000040840	Ensembl Gene Model | MGI Sequence Detail	4097	C57BL/6J
transcript	ENSMUST00000167763	Ensembl | MGI Sequence Detail	968	Not Applicable
polypeptide	Q9D4P9	UniProt | EBI | MGI Sequence Detail	117	Not Applicable

Protein
Information

• UniProt
  1 Sequence

Molecular
Reagents

• All nucleic 3

  cDNA 3

  
  

  Microarray probesets 2

References

• Summaries
  All 15

  Phenotypes 3
• Earliest
  J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
• Latest
  J:80000 The FANTOM Consortium and The RIKEN Genome Exploration Research Group Phase I & II Team, Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Nature. 2002;420:563-573