4930579G18Rik Gene Detail

Summary

• Symbol
  4930579G18Rik
• Name
  RIKEN cDNA 4930579G18 gene

• Feature Type
  lncRNA gene
• IDs
  MGI:1923163
  NCBI Gene: 75913
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr14:54887968-54892199 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 14, 27.88 cM, cytoband C1
• Mapping Data
  2 experiments

Strain
Comparison

• SNPs within 2kb
  156 from dbSNP Build 142
• Strain Annotations
  17

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1923163	lncRNA gene	Chr14:54887968-54892557 (+)
129S1/SvImJ	ENSMUSG00200043522	lncRNA gene	Chr14:43468465-43472584 (+)
A/J	ENSMUSG00195038737	lncRNA gene	Chr14:43692767-43696886 (+)
AKR/J	ENSMUSG00220029330	lncRNA gene	Chr14:43020722-43024841 (+)
BALB/cJ	ENSMUSG00180052526	lncRNA gene	Chr14:43316533-43320652 (+)
C3H/HeJ	ENSMUSG00175051371	lncRNA gene	Chr14:44998931-45003050 (+)
C57BL/6NJ	ENSMUSG00215049938	lncRNA gene	Chr14:43210926-43215022 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0002878	antisense lncRNA gene	Chr14:46078779-46082848 (+)
CAST/EiJ	ENSTCUG00005050472	lncRNA gene	Chr14:44996540-45000592 (+)
CBA/J	ENSMUSG00210049569	lncRNA gene	Chr14:43679464-43683583 (+)
DBA/2J	ENSMUSG00185056191	lncRNA gene	Chr14:48726325-48730444 (+)
FVB/NJ	ENSMUSG00205044414	lncRNA gene	Chr14:43068872-43072991 (+)
JF1/MsJ	ENSUMUG00000054154	lncRNA gene	Chr14:59974016-59978113 (+)
LP/J	no annotation
NOD/ShiLtJ	ENSMUSG00190050069	lncRNA gene	Chr14:43429755-43433874 (+)
NZO/HlLtJ	no annotation
PWK/PhJ	ENSLUMG00010048642	lncRNA gene	Chr14:42902384-42906503 (+)
SPRET/EiJ	ENSMSPG00010047768	lncRNA gene	Chr14:46300298-46304377 (+)
WSB/EiJ	ENSIUOG00005044255	lncRNA gene	Chr14:42894185-42898304 (+)

Homology

• Gene Tree
  4930579G18Rik
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  3 phenotype references
  

• All Mutations and Alleles
  3
• Chemically induced (other)
  1
• Gene trapped
  2
• Genomic Mutations
  1 involving 4930579G18Rik
• Find Mice (IMSR)
  2 strains or lines available

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  597
• cDNA Data
  3

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  24
• RefSeq
  1
• UniProt
  1

• Ensembl
  ENSMUSG00000040840 (Evidence)
• NCBI Gene
  75913

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000040840	Ensembl Gene Model | MGI Sequence Detail	4232	C57BL/6J
transcript	ENSMUST00000167763	Ensembl | MGI Sequence Detail	1091	Not Applicable
polypeptide	Q9D4P9	UniProt | EBI | MGI Sequence Detail	117	Not Applicable

Protein
Information

• UniProt
  1 Sequence

Molecular
Reagents

• All nucleic 3

  cDNA 3

  
  

  Microarray probesets 2

References

• Summaries
  All 16

  Phenotypes 3
• Earliest
  J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
• Latest
  J:80000 The FANTOM Consortium and The RIKEN Genome Exploration Research Group Phase I & II Team, Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Nature. 2002;420:563-573