4930570G19Rik Gene Detail

Summary

• Symbol
  4930570G19Rik
• Name
  RIKEN cDNA 4930570G19 gene

• Feature Type
  lncRNA gene
• IDs
  MGI:1923158
  NCBI Gene: 329782
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr3:156252390-156267383 bp, - strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 3, 80.59 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  446 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1923158	lncRNA gene	Chr3:156073048-156267452 (-)
129S1/SvImJ	ENSMUSG00200000184	lncRNA gene	Chr3:153176881-153262970 (-)
A/J	ENSMUSG00195002747	lncRNA gene	Chr3:153308716-153381994 (-)
AKR/J	ENSMUSG00220011238	lncRNA gene	Chr3:151718003-151804065 (-)
BALB/cJ	ENSMUSG00180006902	lncRNA gene	Chr3:153160455-153233729 (-)
C3H/HeJ	ENSMUSG00175003471	lncRNA gene	Chr3:152776994-152850283 (-)
C57BL/6NJ	ENSMUSG00215004427	lncRNA gene	Chr3:153395373-153468638 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0005800	lincRNA gene	Chr3:149427452-149441867 (-)
CAST/EiJ	ENSTCUG00005000081	lncRNA gene	Chr3:153835175-153908326 (-)
CBA/J	ENSMUSG00210000407	lncRNA gene	Chr3:153396942-153483019 (-)
DBA/2J	ENSMUSG00185000135	lncRNA gene	Chr3:154047555-154133625 (-)
FVB/NJ	ENSMUSG00205009824	lncRNA gene	Chr3:152304642-152391923 (-)
JF1/MsJ	ENSUMUG00000000094	lncRNA gene	Chr3:152813506-152892505 (-)
LP/J	ENSMUSG00230010117	lncRNA gene	Chr3:155925782-156011870 (-)
NOD/ShiLtJ	ENSMUSG00190007596	lncRNA gene	Chr3:154394074-154480136 (-)
NZO/HlLtJ	ENSMUSG00225006376	lncRNA gene	Chr3:158442054-158528139 (-)
PWK/PhJ	ENSLUMG00010001981	lncRNA gene	Chr3:152746895-152820178 (-)
SPRET/EiJ	ENSMSPG00010000343	lncRNA gene	Chr3:154112568-154176066 (-)
WSB/EiJ	ENSIUOG00005003500	lncRNA gene	Chr3:153559159-153632421 (-)

Homology

• Gene Tree
  4930570G19Rik
  

Expression

• Assay Results
  597
• cDNA Data
  4

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  93
• RefSeq
  3

• Ensembl
  ENSMUSG00000085084 (Evidence)
• NCBI Gene
  329782

Representative Sequences			Length	Strain/Species
genomic	329782	NCBI Gene Model | MGI Sequence Detail	14994	C57BL/6J
transcript	NR_040398	RefSeq | MGI Sequence Detail	3124	C57BL/6

Molecular
Reagents

• All nucleic 4

  cDNA 4

  
  

  Microarray probesets 2

References

• Summaries
  All 12
• Earliest
  J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
• Latest
  J:251306 Kaur P, et al., A long non-coding RNA, BC048612 and a microRNA, miR-203 coordinate the gene expression of neuronal growth regulator 1 (NEGR1) adhesion protein. Biochim Biophys Acta. 2016 Apr;1863(4):533-43

TSS for 4930570G19Rik:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr36286	Chr3:156267384-156267412 (-)	-15 bp