4930578I07Rik Gene Detail

Summary

• Symbol
  4930578I07Rik
• Name
  RIKEN cDNA 4930578I07 gene

• Feature Type
  lncRNA gene
• IDs
  MGI:1923142
  NCBI Gene: 75892
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr14:67174814-67176185 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 14, 34.60 cM, cytoband D1
• Mapping Data
  2 experiments

Strain
Comparison

• SNPs within 2kb
  166 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1923142	lncRNA gene	Chr14:67174814-67176185 (+)
129S1/SvImJ	ENSMUSG00200031647	unclassified gene	Chr14:55790489-55791860 (+)
A/J	ENSMUSG00195015823	unclassified gene	Chr14:55955999-55957370 (+)
AKR/J	ENSMUSG00220032117	unclassified gene	Chr14:55296692-55298063 (+)
BALB/cJ	ENSMUSG00180036441	unclassified gene	Chr14:55572202-55573573 (+)
C3H/HeJ	ENSMUSG00175040766	unclassified gene	Chr14:57326957-57328328 (+)
C57BL/6NJ	ENSMUSG00215026698	unclassified gene	Chr14:55509665-55511036 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0000692	unclassified gene	Chr14:58083541-58084697 (+)
CAST/EiJ	ENSTCUG00005039589	unclassified gene	Chr14:57212709-57214087 (+)
CBA/J	ENSMUSG00210041255	unclassified gene	Chr14:55944776-55946147 (+)
DBA/2J	ENSMUSG00185024150	unclassified gene	Chr14:61124787-61126158 (+)
FVB/NJ	ENSMUSG00205040705	unclassified gene	Chr14:55458846-55460217 (+)
JF1/MsJ	ENSUMUG00000044432	unclassified gene	Chr14:72283164-72284524 (+)
LP/J	ENSMUSG00230036821	unclassified gene	Chr14:73154002-73155373 (+)
NOD/ShiLtJ	ENSMUSG00190044361	unclassified gene	Chr14:55737988-55739359 (+)
NZO/HlLtJ	ENSMUSG00225040410	unclassified gene	Chr14:63470867-63472238 (+)
PWK/PhJ	ENSLUMG00010038341	unclassified gene	Chr14:55162177-55163558 (+)
SPRET/EiJ	ENSMSPG00010035942	unclassified gene	Chr14:58673328-58675219 (+)
WSB/EiJ	ENSIUOG00005041874	unclassified gene	Chr14:55181911-55183282 (+)

Homology

• Gene Tree
  4930578I07Rik
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  1
• Chemically induced (other)
  1
• Genomic Mutations
  1 involving 4930578I07Rik
• Incidental Mutations
  Mutagenetix , APF
• Find Mice (IMSR)
  2 strains or lines available

Expression

• Assay Results
  597
• cDNA Data
  2

Tissue x Stage Matrix

• Other Mouse Links
  Allen Institute
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  22
• UniProt
  1

• Ensembl
  ENSMUSG00000104220 (Evidence)
• NCBI Gene
  75892

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000104220	Ensembl Gene Model | MGI Sequence Detail	1372	C57BL/6J
transcript	AK016303	GenBank | ENA | DDBJ | MGI Sequence Detail	1371	C57BL/6J
polypeptide	Q9D4Q3	UniProt | EBI | MGI Sequence Detail	112	Not Applicable

Protein
Information

• UniProt
  1 Sequence

Molecular
Reagents

• All nucleic 2

  cDNA 2

  
  

  Microarray probesets 2

References

• Summaries
  All 13

  Phenotypes 2
• Earliest
  J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
• Latest
  J:80000 The FANTOM Consortium and The RIKEN Genome Exploration Research Group Phase I & II Team, Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Nature. 2002;420:563-573