4930579K19Rik Gene Detail

Summary

• Symbol
  4930579K19Rik
• Name
  RIKEN cDNA 4930579K19 gene

• Feature Type
  lncRNA gene
• IDs
  MGI:1923131
  NCBI Gene: 75881
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr9:98444513-98445664 bp, - strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 9, 51.40 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  52 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1923131	lncRNA gene	Chr9:98444122-98445669 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0015755	unclassified non-coding RNA gene	Chr9:99867244-99868626 (-)
A/J	MGP_AJ_G0015732	unclassified non-coding RNA gene	Chr9:96361554-96362936 (-)
AKR/J	MGP_AKRJ_G0015695	unclassified non-coding RNA gene	Chr9:98726534-98727916 (-)
BALB/cJ	MGP_BALBcJ_G0015693	unclassified non-coding RNA gene	Chr9:96041430-96042812 (-)
C3H/HeJ	MGP_C3HHeJ_G0015514	unclassified non-coding RNA gene	Chr9:99106800-99108182 (-)
C57BL/6NJ	MGP_C57BL6NJ_G0016148	unclassified non-coding RNA gene	Chr9:102731652-102733034 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0013873	unclassified non-coding RNA gene	Chr9:94124262-94125651 (-)
CAST/EiJ	MGP_CASTEiJ_G0015069	unclassified non-coding RNA gene	Chr9:98911816-98913200 (-)
CBA/J	MGP_CBAJ_G0015494	unclassified non-coding RNA gene	Chr9:106256658-106258040 (-)
DBA/2J	MGP_DBA2J_G0015593	unclassified non-coding RNA gene	Chr9:95867965-95869347 (-)
FVB/NJ	MGP_FVBNJ_G0015598	unclassified non-coding RNA gene	Chr9:94698504-94699886 (-)
LP/J	MGP_LPJ_G0015673	unclassified non-coding RNA gene	Chr9:100121306-100122688 (-)
NOD/ShiLtJ	MGP_NODShiLtJ_G0015621	unclassified non-coding RNA gene	Chr9:108193821-108195203 (-)
NZO/HlLtJ	MGP_NZOHlLtJ_G0016191	unclassified non-coding RNA gene	Chr9:98934317-98935703 (-)
PWK/PhJ	MGP_PWKPhJ_G0014852	unclassified non-coding RNA gene	Chr9:96080338-96081724 (-)
SPRET/EiJ	MGP_SPRETEiJ_G0014639	unclassified non-coding RNA gene	Chr9:98995027-98996419 (-)
WSB/EiJ	MGP_WSBEiJ_G0015173	unclassified non-coding RNA gene	Chr9:98815403-98816789 (-)

Homology

• Gene Tree
  4930579K19Rik
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  1
• Chemically induced (other)
  1
• Genomic Mutations
  1 involving 4930579K19Rik
• Incidental Mutations
  Mutagenetix , APF
• Find Mice (IMSR)
  2 strains or lines available

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  706
• cDNA Data
  10

Tissue x Stage Matrix

• Other Mouse Links
  Allen Institute
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  29
• RefSeq
  1
• UniProt
  1

• Ensembl
  ENSMUSG00000051074 (Evidence)
• NCBI Gene
  75881

Representative Sequences			Length	Strain/Species
genomic	75881	NCBI Gene Model | MGI Sequence Detail	1152	C57BL/6J
transcript	NR_029444	RefSeq | MGI Sequence Detail	1152	C57BL/6
polypeptide	Q8BH39	UniProt | EBI | MGI Sequence Detail	113	Not Applicable

Protein
Information

• UniProt
  1 Sequence

Molecular
Reagents

• All nucleic 10

  cDNA 10

  
  

  Microarray probesets 2

References

• Summaries
  All 15

  Phenotypes 2
• Earliest
  J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
• Latest
  J:153498 Diez-Roux G, et al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo. PLoS Biol. 2011;9(1):e1000582

TSS for 4930579K19Rik:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr91030	Chr9:98445633-98445673 (-)	11 bp