4930589L23Rik Gene Detail

Summary

• Symbol
  4930589L23Rik
• Name
  RIKEN cDNA 4930589L23 gene

• Feature Type
  lncRNA gene
• IDs
  MGI:1923129
  NCBI Gene: 75879
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr3:79475499-79479887 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 3, 34.91 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  216 from dbSNP Build 142
• Strain Annotations
  24

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1923129	lncRNA gene	Chr3:79475474-79479890 (+)
129S1/SvImJ	ENSMUSG00200019349	lncRNA gene	Chr3:76255836-76260239 (+)
A/J	ENSMUSG00195011902	lncRNA gene	Chr3:76319057-76323486 (+)
AKR/J	ENSMUSG00220001533	lncRNA gene	Chr3:76332216-76336635 (+)
BALB/cJ	ENSMUSG00180001800	protein coding gene	Chr3:76410772-76416546 (+)
BALB/cJ	ENSMUSG00180001907	lncRNA gene	Chr3:76410979-76415404 (+)
C3H/HeJ	ENSMUSG00175007574	lncRNA gene	Chr3:76257217-76261648 (+)
C57BL/6NJ	ENSMUSG00215002091	lncRNA gene	Chr3:76707879-76712263 (+)
C57BL/6NJ	ENSMUSG00215001985	protein coding gene	Chr3:76707672-76713318 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0005653	lincRNA gene	Chr3:72320839-72324526 (+)
CAST/EiJ	ENSTCUG00005001939	lncRNA gene	Chr3:75817792-75822313 (+)
CBA/J	ENSMUSG00210025663	lncRNA gene	Chr3:76339637-76344058 (+)
DBA/2J	ENSMUSG00185012786	lncRNA gene	Chr3:76495720-76500140 (+)
DBA/2J	ENSMUSG00185012490	protein coding gene	Chr3:76495513-76501196 (+)
FVB/NJ	ENSMUSG00205006616	lncRNA gene	Chr3:75352383-75356807 (+)
FVB/NJ	ENSMUSG00205006125	protein coding gene	Chr3:75352176-75357863 (+)
JF1/MsJ	ENSUMUG00000001818	lncRNA gene	Chr3:76083673-76087473 (+)
LP/J	ENSMUSG00230009758	lncRNA gene	Chr3:78510490-78514892 (+)
NOD/ShiLtJ	ENSMUSG00190002531	protein coding gene	Chr3:76829940-76835628 (+)
NOD/ShiLtJ	ENSMUSG00190002934	lncRNA gene	Chr3:76830147-76834572 (+)
NZO/HlLtJ	ENSMUSG00225007822	lncRNA gene	Chr3:81226028-81230436 (+)
PWK/PhJ	ENSLUMG00010006424	lncRNA gene	Chr3:76152596-76156341 (+)
SPRET/EiJ	ENSMSPG00010018023	lncRNA gene	Chr3:76884146-76888480 (+)
WSB/EiJ	ENSIUOG00005003130	lncRNA gene	Chr3:76741174-76745593 (+)

Homology

• Gene Tree
  4930589L23Rik
  

Human Diseases

• References
  1 with disease annotations

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  4 phenotype references
  

• All Mutations and Alleles
  2
• Chemically induced (other)
  1
• Radiation induced
  1
• Genomic Mutations
  2 involving 4930589L23Rik
• Find Mice (IMSR)
  2 strains or lines available

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  597
• cDNA Data
  2

Tissue x Stage Matrix

• Other Mouse Links
  Allen Institute
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  30
• RefSeq
  1
• UniProt
  1

• Ensembl
  ENSMUSG00000068957 (Evidence)
• NCBI Gene
  75879

Representative Sequences			Length	Strain/Species
genomic	75879	NCBI Gene Model | MGI Sequence Detail	4389	C57BL/6J
transcript	NR_152118	RefSeq | MGI Sequence Detail	1364	C57BL/6
polypeptide	Q9D4N6	UniProt | EBI | MGI Sequence Detail	161	Not Applicable

Protein
Information

• UniProt
  1 Sequence

Molecular
Reagents

• All nucleic 2

  cDNA 2

  
  

  Microarray probesets 2

References

• Summaries
  All 16

  Diseases 1

  Phenotypes 4
• Earliest
  J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
• Latest
  J:302829 Lu J, et al., Mouse models for human hyperuricaemia: a critical review. Nat Rev Rheumatol. 2019 Jul;15(7):413-426

TSS for 4930589L23Rik:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr29585	Chr3:79475609-79475619 (+)	115 bp