4930566F21Rik Gene Detail

Summary

• Symbol
  4930566F21Rik
• Name
  RIKEN cDNA 4930566F21 gene

• Feature Type
  lncRNA gene
• IDs
  MGI:1923094
  NCBI Gene: 75844
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr5:31641450-31652523 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 5, 17.27 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  382 from dbSNP Build 142
• Strain Annotations
  17

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1923094	lncRNA gene	Chr5:31641450-31652523 (-)
129S1/SvImJ	ENSMUSG00200014544	lncRNA gene	Chr5:27110702-27119244 (-)
A/J	ENSMUSG00195049437	lncRNA gene	Chr5:26591311-26599854 (-)
AKR/J	ENSMUSG00220009735	lncRNA gene	Chr5:26605947-26614489 (-)
BALB/cJ	ENSMUSG00180038204	lncRNA gene	Chr5:26395868-26404411 (-)
C3H/HeJ	ENSMUSG00175048981	lncRNA gene	Chr5:28370166-28378709 (-)
C57BL/6NJ	ENSMUSG00215042625	lncRNA gene	Chr5:27107092-27115642 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0003647	antisense lncRNA gene	Chr5:26160366-26169785 (-)
CAST/EiJ	ENSTCUG00005026077	lncRNA gene	Chr5:26584583-26593264 (-)
CBA/J	ENSMUSG00210049144	lncRNA gene	Chr5:27343316-27351859 (-)
DBA/2J	ENSMUSG00185039185	lncRNA gene	Chr5:29198318-29206868 (-)
FVB/NJ	ENSMUSG00205043577	lncRNA gene	Chr5:26094790-26103333 (-)
JF1/MsJ	no annotation
LP/J	ENSMUSG00230048176	lncRNA gene	Chr5:33814532-33823074 (-)
NOD/ShiLtJ	ENSMUSG00190016104	lncRNA gene	Chr5:26362078-26370628 (-)
NZO/HlLtJ	ENSMUSG00225021231	lncRNA gene	Chr5:39023054-39031604 (-)
PWK/PhJ	no annotation
SPRET/EiJ	ENSMSPG00010044973	lncRNA gene	Chr5:27660878-27669962 (-)
WSB/EiJ	ENSIUOG00005043944	lncRNA gene	Chr5:29286613-29295166 (-)

Homology

• Gene Tree
  4930566F21Rik
  

Human Diseases

• References
  1 with disease annotations

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  25 phenotype references
  

• All Mutations and Alleles
  27
• Chemically induced (other)
  2
• Gene trapped
  22
• Radiation induced
  2
• Spontaneous
  1
• Genomic Mutations
  5 involving 4930566F21Rik
• Find Mice (IMSR)
  7 strains or lines available

Expression

• Assay Results
  597
• cDNA Data
  1

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  32

• Ensembl
  ENSMUSG00000107142 (Evidence)
• NCBI Gene
  75844

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000107142	Ensembl Gene Model | MGI Sequence Detail	11074	C57BL/6J
transcript	ENSMUST00000201177	Ensembl | MGI Sequence Detail	1535	Not Applicable

Molecular
Reagents

• All nucleic 1

  cDNA 1

References

• Summaries
  All 31

  Diseases 1

  Phenotypes 25
• Earliest
  J:5021 Batchelor AL, et al., A comparison of the mutagenic effectiveness of chronic neutron- and gamma-irradiation of mouse spermatogonia. Mutat Res. 1966 Jun;3(3):218-29
• Latest
  J:142754 Hansen GM, et al., Large-scale gene trapping in C57BL/6N mouse embryonic stem cells. Genome Res. 2008 Oct;18(10):1670-9

TSS for 4930566F21Rik:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr50549	Chr5:31646450-31646498 (-)	6,049 bp