4930556H04Rik Gene Detail

Summary

• Symbol
  4930556H04Rik
• Name
  RIKEN cDNA 4930556H04 gene

• Feature Type
  lncRNA gene
• IDs
  MGI:1923092
  NCBI Gene: 75842
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr12:99535999-99537673 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 12, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  155 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1923092	lncRNA gene	Chr12:99535999-99537673 (+)
129S1/SvImJ	ENSMUSG00200017898	unclassified gene	Chr12:91308989-91310663 (+)
A/J	ENSMUSG00195022345	unclassified gene	Chr12:93871044-93872718 (+)
AKR/J	ENSMUSG00220017916	unclassified gene	Chr12:91762995-91764669 (+)
BALB/cJ	ENSMUSG00180038235	unclassified gene	Chr12:93021914-93023588 (+)
C3H/HeJ	ENSMUSG00175036761	unclassified gene	Chr12:95684143-95685817 (+)
C57BL/6NJ	ENSMUSG00215040759	unclassified gene	Chr12:92333156-92334830 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005006174	unclassified gene	Chr12:91968788-91970471 (+)
CBA/J	ENSMUSG00210015033	unclassified gene	Chr12:92680863-92682537 (+)
DBA/2J	ENSMUSG00185046334	unclassified gene	Chr12:94463020-94464695 (+)
FVB/NJ	ENSMUSG00205021594	unclassified gene	Chr12:91836464-91838138 (+)
JF1/MsJ	ENSUMUG00000026721	unclassified gene	Chr12:99178473-99180147 (+)
LP/J	ENSMUSG00230004716	unclassified gene	Chr12:101574135-101575809 (+)
NOD/ShiLtJ	ENSMUSG00190005248	unclassified gene	Chr12:93464565-93466239 (-)
NZO/HlLtJ	ENSMUSG00225033636	unclassified gene	Chr12:103281692-103283367 (+)
PWK/PhJ	ENSLUMG00010013319	unclassified gene	Chr12:92677329-92679003 (+)
SPRET/EiJ	ENSMSPG00010019359	unclassified gene	Chr12:95100572-95102255 (+)
WSB/EiJ	ENSIUOG00005002241	unclassified gene	Chr12:91661807-91663481 (+)

Homology

• Gene Tree
  4930556H04Rik
  

Expression

• Assay Results
  597
• cDNA Data
  1

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  21

• Ensembl
  ENSMUSG00000114190 (Evidence)
• NCBI Gene
  75842

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000114190	Ensembl Gene Model | MGI Sequence Detail	1675	C57BL/6J
transcript	AK016144	GenBank | ENA | DDBJ | MGI Sequence Detail	1676	C57BL/6J

Molecular
Reagents

• All nucleic 1

  cDNA 1

  
  

  Microarray probesets 1

References

• Summaries
  All 7
• Earliest
  J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
• Latest
  J:80000 The FANTOM Consortium and The RIKEN Genome Exploration Research Group Phase I & II Team, Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Nature. 2002;420:563-573