4930558N01Rik Gene Detail

Summary

• Symbol
  4930558N01Rik
• Name
  RIKEN cDNA 4930558N01 gene

• Feature Type
  lncRNA gene
• IDs
  MGI:1923090
  NCBI Gene: 75840
• Alliance
  genome feature page
• Transcription Start Sites
  4 TSS

Location &
Maps

• Sequence Map
  Chr7:98305358-98307158 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 7, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  103 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1923090	lncRNA gene	Chr7:98305358-98307158 (+)
129S1/SvImJ	ENSMUSG00200050020	lncRNA gene	Chr7:85124204-85125262 (+)
A/J	ENSMUSG00195039517	lncRNA gene	Chr7:89629175-89630233 (+)
AKR/J	ENSMUSG00220051690	lncRNA gene	Chr7:83045997-83047055 (+)
BALB/cJ	ENSMUSG00180036540	lncRNA gene	Chr7:86302590-86303648 (+)
C3H/HeJ	ENSMUSG00175024501	lncRNA gene	Chr7:86949911-86950969 (+)
C57BL/6NJ	ENSMUSG00215038097	lncRNA gene	Chr7:86149774-86150832 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005034042	lncRNA gene	Chr7:89539707-89540761 (+)
CBA/J	ENSMUSG00210025827	lncRNA gene	Chr7:86797800-86798858 (+)
DBA/2J	ENSMUSG00185056964	lncRNA gene	Chr7:91124583-91125641 (+)
FVB/NJ	ENSMUSG00205037319	lncRNA gene	Chr7:86800935-86801993 (+)
JF1/MsJ	ENSUMUG00000050917	lncRNA gene	Chr7:96030441-96031499 (+)
LP/J	ENSMUSG00230044759	lncRNA gene	Chr7:97241137-97242195 (+)
NOD/ShiLtJ	ENSMUSG00190022487	lncRNA gene	Chr7:87075736-87076794 (+)
NZO/HlLtJ	ENSMUSG00225051016	lncRNA gene	Chr7:95427635-95428693 (+)
PWK/PhJ	ENSLUMG00010050784	lncRNA gene	Chr7:85253592-85254648 (+)
SPRET/EiJ	ENSMSPG00010012395	lncRNA gene	Chr7:86490174-86491231 (+)
WSB/EiJ	ENSIUOG00005011001	lncRNA gene	Chr7:87419298-87420356 (+)

Homology

• Gene Tree
  4930558N01Rik
  

Expression

• cDNA Data
  7

• Other Mouse Links
  GEO

Sequences &
Gene Models

• All Sequences
  23

• Ensembl
  ENSMUSG00000120382 (Evidence)
• NCBI Gene
  75840

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000120382	Ensembl Gene Model | MGI Sequence Detail	1801	C57BL/6J
transcript	ENSMUST00000242909	Ensembl | MGI Sequence Detail	1801	Not Applicable

Molecular
Reagents

• All nucleic 7

  cDNA 7

  
  

  Microarray probesets 1

References

• Summaries
  All 8
• Earliest
  J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
• Latest
  J:80000 The FANTOM Consortium and The RIKEN Genome Exploration Research Group Phase I & II Team, Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Nature. 2002;420:563-573

TSS for 4930558N01Rik:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr68028	Chr7:98305024-98305060 (+)	-316 bp
Tssr68029	Chr7:98305352-98305366 (+)	1 bp
Tssr68030	Chr7:98305381-98305408 (+)	37 bp
Tssr68031	Chr7:98306108-98306153 (+)	773 bp