4930467D21Rik Gene Detail

Summary

• Symbol
  4930467D21Rik
• Name
  RIKEN cDNA 4930467D21 gene
• Synonyms
  4930448L09Rik

• Feature Type
  lncRNA gene
• IDs
  MGI:1923064
  NCBI Gene: 75814
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr5:97540276-97735985 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 5, 47.64 cM
• Mapping Data
  2 experiments

Strain
Comparison

• SNPs within 2kb
  4656 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1923064	lncRNA gene	Chr5:97540251-97790042 (+)
129S1/SvImJ	ENSMUSG00200010130	lncRNA gene	Chr5:91245162-91503744 (+)
A/J	ENSMUSG00195027142	lncRNA gene	Chr5:90818968-91070191 (+)
AKR/J	ENSMUSG00220012513	lncRNA gene	Chr5:90273309-90538586 (+)
BALB/cJ	ENSMUSG00180028506	lncRNA gene	Chr5:90975358-91225298 (+)
C3H/HeJ	ENSMUSG00175035977	lncRNA gene	Chr5:93078408-93339266 (+)
C57BL/6NJ	ENSMUSG00215035208	lncRNA gene	Chr5:90922969-91172758 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005039269	lncRNA gene	Chr5:90323831-90571078 (+)
CBA/J	ENSMUSG00210036485	lncRNA gene	Chr5:91850074-92098240 (+)
DBA/2J	ENSMUSG00185038748	lncRNA gene	Chr5:94766151-95014312 (+)
FVB/NJ	ENSMUSG00205036791	lncRNA gene	Chr5:90738452-90988415 (+)
JF1/MsJ	ENSUMUG00000048428	lncRNA gene	Chr5:97705898-97960507 (+)
LP/J	ENSMUSG00230028798	lncRNA gene	Chr5:98809344-99057422 (+)
NOD/ShiLtJ	ENSMUSG00190042373	lncRNA gene	Chr5:90751296-90998989 (+)
NZO/HlLtJ	ENSMUSG00225013481	lncRNA gene	Chr5:106564720-106814634 (+)
PWK/PhJ	ENSLUMG00010031664	lncRNA gene	Chr5:89841399-90089904 (+)
SPRET/EiJ	ENSMSPG00010027939	lncRNA gene	Chr5:92700659-92955767 (+)
WSB/EiJ	ENSIUOG00005033693	lncRNA gene	Chr5:93457191-93712316 (+)

Homology

• Gene Tree
  4930467D21Rik
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  7 phenotype references
  

• All Mutations and Alleles
  4
• Chemically induced (other)
  1
• Gene trapped
  1
• Radiation induced
  1
• Spontaneous
  1
• Genomic Mutations
  3 involving 4930467D21Rik
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597
• cDNA Data
  3

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  47
• RefSeq
  1

• Ensembl
  ENSMUSG00000097516 (Evidence)
• NCBI Gene
  75814

Representative Sequences			Length	Strain/Species
genomic	75814	NCBI Gene Model | MGI Sequence Detail	195710	C57BL/6J
transcript	NR_045981	RefSeq | MGI Sequence Detail	2995	C57BL/6

Molecular
Reagents

• All nucleic 3

  cDNA 3

  
  

  Microarray probesets 1

Other
Accession IDs

MGI:1922116, MGI:2141257

References

• Summaries
  All 19

  Phenotypes 7
• Earliest
  J:134667 Roderick TH, et al., Two radiation-induced chromosomal inversions in mice (Mus musculus). Proc Natl Acad Sci U S A. 1970 Oct;67(2):961-7
• Latest
  J:99680 The FANTOM Consortium and RIKEN Genome Exploration Research Group and Genome Science Group (Genome Network Project Core Group), The Transcriptional Landscape of the Mammalian Genome. Science. 2005;309(5740):1559-1563